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The map label for this gene is yjjV [C]

Identifier: 15602807

GI number: 15602807

Start: 1113327

End: 1114118

Strand: Reverse

Name: yjjV [C]

Synonym: PM0942

Alternate gene names: 15602807

Gene position: 1114118-1113327 (Counterclockwise)

Preceding gene: 15602808

Following gene: 15602799

Centisome position: 49.35

GC content: 40.53

Gene sequence:

>792_bases
ATGCCATTTTTTGATACACATATCCATTTAGATTATTTACAGCAAGAAACAGGAGAAACGCTGGCACAATTAGTGGAACA
AGCACAACAAGCCAATGTGCAAAAAATGCTAATGGTTGGCGTCTCTTCCGAGCATATTGTGACACTTACACAAATGGCTA
CTGCGTATCCTGAGTCTTTGTATTACGGCGTCGGGCTTCATCCTTTGTATATTCGGCAGCATACTTACGCTGATTTAGAG
AAATTGCAACAGACGTTAGACAAACGACTTTCTAATTGTTGTGCTGTGGCAGAAATTGGTCTAGAAAGAGCGGTACCCGA
TTTGTTAAATGACGGGCTATGGGAAAAACAATGTGCGTTTCTTGAAGCACAGCTAGTATTGGCAAAGCAGTATGGCTTAG
CGGTCAGTTTACATTCACGTAAAGCACATGATCAGCTTGTTCCTTTTTTACGGTATATTTCTTCACCAATGTGTGGTATT
ATCCACGGATTTTCTGGTAGCTATCAACAAGCTGTTCGTTTTGTTGATCTCGGTTATAAAATCGGAGTAGGCGGGACGAT
TACGTATTTGCGTGCGAATAAAACTCGTGATGTGATTCGCCGTTTGCCTTTAGATTGCCTTGTATTAGAAACTGATGCGC
CTGATATGCCTGTATTTGGCTTTCAAGGACAAGCCAATCGACCGGAGAGAATCGTCAATATTTTTGCTCATTTATGTGAG
TTAAGAGCGGAAAGACCAGAAGAAATTAAGCAAGTTATTTGGCAAAATAGCTGTAAGCTGTTTTCAATTTAA

Upstream 100 bases:

>100_bases
GCTAGCATCACTTTTATGGGCGCGATAGCGGGTCGTTATTTTGATTATTCAGGGAAAATAACTCTCTAGTTCTAATGCAT
AAGAATGAATAGAAAACGAT

Downstream 100 bases:

>100_bases
AGTTCCTATTTACTCTTTTTATGTTGAGAAGATAACTTATGCTCAAAGCAAGGATGTTACTCTTATTACGCATTTATTTA
TTACTTTCTGAGCGCGTTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MPFFDTHIHLDYLQQETGETLAQLVEQAQQANVQKMLMVGVSSEHIVTLTQMATAYPESLYYGVGLHPLYIRQHTYADLE
KLQQTLDKRLSNCCAVAEIGLERAVPDLLNDGLWEKQCAFLEAQLVLAKQYGLAVSLHSRKAHDQLVPFLRYISSPMCGI
IHGFSGSYQQAVRFVDLGYKIGVGGTITYLRANKTRDVIRRLPLDCLVLETDAPDMPVFGFQGQANRPERIVNIFAHLCE
LRAERPEEIKQVIWQNSCKLFSI

Sequences:

>Translated_263_residues
MPFFDTHIHLDYLQQETGETLAQLVEQAQQANVQKMLMVGVSSEHIVTLTQMATAYPESLYYGVGLHPLYIRQHTYADLE
KLQQTLDKRLSNCCAVAEIGLERAVPDLLNDGLWEKQCAFLEAQLVLAKQYGLAVSLHSRKAHDQLVPFLRYISSPMCGI
IHGFSGSYQQAVRFVDLGYKIGVGGTITYLRANKTRDVIRRLPLDCLVLETDAPDMPVFGFQGQANRPERIVNIFAHLCE
LRAERPEEIKQVIWQNSCKLFSI
>Mature_262_residues
PFFDTHIHLDYLQQETGETLAQLVEQAQQANVQKMLMVGVSSEHIVTLTQMATAYPESLYYGVGLHPLYIRQHTYADLEK
LQQTLDKRLSNCCAVAEIGLERAVPDLLNDGLWEKQCAFLEAQLVLAKQYGLAVSLHSRKAHDQLVPFLRYISSPMCGII
HGFSGSYQQAVRFVDLGYKIGVGGTITYLRANKTRDVIRRLPLDCLVLETDAPDMPVFGFQGQANRPERIVNIFAHLCEL
RAERPEEIKQVIWQNSCKLFSI

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=267, Percent_Identity=26.5917602996255, Blast_Score=68, Evalue=9e-12,
Organism=Escherichia coli, GI87082439, Length=262, Percent_Identity=49.618320610687, Blast_Score=239, Evalue=2e-64,
Organism=Escherichia coli, GI1787342, Length=265, Percent_Identity=25.2830188679245, Blast_Score=88, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17559024, Length=278, Percent_Identity=25.1798561151079, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71980746, Length=214, Percent_Identity=24.2990654205607, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24648690, Length=214, Percent_Identity=28.9719626168224, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI221330018, Length=200, Percent_Identity=27.5, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24586117, Length=200, Percent_Identity=27.5, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29782; Mature: 29651

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFFDTHIHLDYLQQETGETLAQLVEQAQQANVQKMLMVGVSSEHIVTLTQMATAYPESL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHCHHHH
YYGVGLHPLYIRQHTYADLEKLQQTLDKRLSNCCAVAEIGLERAVPDLLNDGLWEKQCAF
EECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LEAQLVLAKQYGLAVSLHSRKAHDQLVPFLRYISSPMCGIIHGFSGSYQQAVRFVDLGYK
HHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHCCEE
IGVGGTITYLRANKTRDVIRRLPLDCLVLETDAPDMPVFGFQGQANRPERIVNIFAHLCE
ECCCCEEEEEECCCHHHHHHHCCCCEEEEECCCCCCCEECCCCCCCCHHHHHHHHHHHHH
LRAERPEEIKQVIWQNSCKLFSI
HHCCCHHHHHHHHHHCCCCEECC
>Mature Secondary Structure 
PFFDTHIHLDYLQQETGETLAQLVEQAQQANVQKMLMVGVSSEHIVTLTQMATAYPESL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHCHHHH
YYGVGLHPLYIRQHTYADLEKLQQTLDKRLSNCCAVAEIGLERAVPDLLNDGLWEKQCAF
EECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LEAQLVLAKQYGLAVSLHSRKAHDQLVPFLRYISSPMCGIIHGFSGSYQQAVRFVDLGYK
HHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHCCEE
IGVGGTITYLRANKTRDVIRRLPLDCLVLETDAPDMPVFGFQGQANRPERIVNIFAHLCE
ECCCCEEEEEECCCHHHHHHHCCCCEEEEECCCCCCCEECCCCCCCCHHHHHHHHHHHHH
LRAERPEEIKQVIWQNSCKLFSI
HHCCCHHHHHHHHHHCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]