Click here to switch to the map view.

The map label for this gene is nrdD [H]

Identifier: 15602805

GI number: 15602805

Start: 1110332

End: 1112473

Strand: Direct

Name: nrdD [H]

Synonym: PM0940

Alternate gene names: 15602805

Gene position: 1110332-1112473 (Clockwise)

Preceding gene: 15602804

Following gene: 15602806

Centisome position: 49.18

GC content: 41.41

Gene sequence:

>2142_bases
ATGGCAACTTTCTTTGTAATTAAACGAGATGGGTCACGAACGGGGTTTGAAATCCAACGTATCATTAATGCAATTAAAAA
AGCGGCACAAGCGGTGAATATTGAAGATGAACGTTATTGTCATACAATGGGACAGCAGGTATGTAATGACATCTTTACTC
GTTACCAACAAGAAATTGATATCAGCCACATTCAAAAAATCGTAGAAAATACCTTAATGGCGGGAAAATACCCTGAAATA
GCGCGAGCTTATATCGAATACCGCCATGATCGGGATCTCGCGCGAGAAAAACGCAGTCAACTCACAAAAGAAATCGAAGG
ATTAATTCAGCAAAGTAATGTTGAACTCCTCAATGAAAATGCCAATAAAGATGCGAAAGTTATCCCAACTCAACGCGATC
TCTTAGCGGGTATTGTGGCAAAACATTACGCTAAACGTTATATTCTGCCACGCGATGTCGTAGACGCACATGAAAAAGGG
GAAATTCATTATCACGATTTAGACTATGCCCCATTTTTCCCAATGTTTAACTGCATGCTTGTCGATCTCAAAGGGATGCT
AAGCAATGGTTTCAAAATGGGTAATGCCGAAATTGAACCACCGAAATCGATCACAACAGCAACCGCAGTCAGTGCACAAA
TTATCGCACAAGTCGCGAGCCATATTTACGGTGGTACCACGATTAACCGTATAGATGAAATCCTTGCCCCTTATGTGCAA
TTAAGTTATGAAAAACATTTAAAAAATGCAGCGGAATGGAAAGTTCCCGAACCAGAAGCCTACGCGAAAGCACTCATTGA
AAAAGAATGTTTCGACGCTTTTCAATCCTTAGAATATGAAGTCAATACGCTGCATACTTCAAATGGGCAAACCCCTTTTG
TCACTTTTGGCTTTGGCTTAGGAACGACGTGGCAATCGAGACTTATCCAGCGCTCAATTCTGAAAAATCGTATTCGTGGT
TTAGGCAAAAATCACAAAACCCCTGTCTTCCCAAAACTGGTGTTCACTATTAAAAAAGGCATTAACCATAGCCCGAGTGA
TCCTAACTACGACATTAAACAACTGGCTTTAGAATGTGCCTCCAAACGGATGTATCCTGATATTCTCAATTATGATCAGG
TGGTGAAAGTCACGGGTTCTTTTAAAGCACCAATGGGATGCCGTAGTTTCTTAGGTGCTTATCAGGAGCAAGGACAGGAA
ATCCATGATGGACGTAATAACTTAGGCGTAGTGAGTTTGAATTTACCGCGTATAGCAATTGAAGCCAACGCCACGAATTC
AGCCCAAAGTGCGGTCGAGTTTTATAAAATTTTAGATCAACGTCTTGCGATTGCCAAAAAAGCCTTAATGACACGCATTG
CACGTTTAGAACATACCAAAGCTCGCGTTGCCCCAATTCTTTATATGGAGGGTGCCTGTGGTGTACGCTTAAAGGCTGAT
GACAATGTGGCACAAATCTTTAAAAATGGGCGTGCCTCTATTTCGTTAGGCTATATTGGTATCCATGAAACAATCAATGC
CCTCTACGGCGATAAACATATTTATGATGATGAACAACTCCGCCAAAAAGGGATTGAAATCGTCGAATATTTACACGAGA
CCGTGCAACGTTGGAAACAAGAAACAGGTTATGCTTTCAGCCTATATTCCACACCAAGTGAAAACCTTTGTGACCGTTTC
TGTCGCTTGGATACTAAGCAATTTGGGCTTATCGAAGGTGTCACAGATAAAGGCTACTATACTAATAGCTACCACTTAGA
CGTAGAGAAAAAAGTCAATCCTTATGACAAGATAGATTTTGAATTGCCTTATCCACCGTTCGCAAGCGGCGGGTTTATTT
GCTATGGTGAATACCCAAATGTTCAGCATAACCTTAAAGCATTAGAGGACGTTTGGGATTATAGCTATGACAGAGTGCCT
TACTATGGGACCAATACACCGATTGATGAATGCTATGAATGTGGTTTCAGTGGTGAATTTGAATGTACCAGTAAAGGGTT
TACTTGTCCGAAATGTGGTAACCATGACAGTGAGAAAGTCTCCGTGACCCGACGTGTCTGTGGCTATCTTGGCAGTCCAG
ATGCCAGACCATTTAATGCCGGTAAACAAGAAGAAGTCAAGCGCAGAGTAAAACATCTCTAA

Upstream 100 bases:

>100_bases
ACGAACACAAAAAACACTATATCTTGTGGTTGAAAATAAAATTTTAACTATATATAGTATCCTCGTTCTTTGGGTCATAT
AGATAAAATAGGGTGAAAAA

Downstream 100 bases:

>100_bases
GCCAGTCCGACGTCCTTGACCATATGTCACGGACGTCAGTATCGTAGAAAATAAGCACGGTGAAGCCCGCTATGAATTAC
GTCCAATATTATCCTACTGA

Product: anaerobic ribonucleoside triphosphate reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 713; Mature: 712

Protein sequence:

>713_residues
MATFFVIKRDGSRTGFEIQRIINAIKKAAQAVNIEDERYCHTMGQQVCNDIFTRYQQEIDISHIQKIVENTLMAGKYPEI
ARAYIEYRHDRDLAREKRSQLTKEIEGLIQQSNVELLNENANKDAKVIPTQRDLLAGIVAKHYAKRYILPRDVVDAHEKG
EIHYHDLDYAPFFPMFNCMLVDLKGMLSNGFKMGNAEIEPPKSITTATAVSAQIIAQVASHIYGGTTINRIDEILAPYVQ
LSYEKHLKNAAEWKVPEPEAYAKALIEKECFDAFQSLEYEVNTLHTSNGQTPFVTFGFGLGTTWQSRLIQRSILKNRIRG
LGKNHKTPVFPKLVFTIKKGINHSPSDPNYDIKQLALECASKRMYPDILNYDQVVKVTGSFKAPMGCRSFLGAYQEQGQE
IHDGRNNLGVVSLNLPRIAIEANATNSAQSAVEFYKILDQRLAIAKKALMTRIARLEHTKARVAPILYMEGACGVRLKAD
DNVAQIFKNGRASISLGYIGIHETINALYGDKHIYDDEQLRQKGIEIVEYLHETVQRWKQETGYAFSLYSTPSENLCDRF
CRLDTKQFGLIEGVTDKGYYTNSYHLDVEKKVNPYDKIDFELPYPPFASGGFICYGEYPNVQHNLKALEDVWDYSYDRVP
YYGTNTPIDECYECGFSGEFECTSKGFTCPKCGNHDSEKVSVTRRVCGYLGSPDARPFNAGKQEEVKRRVKHL

Sequences:

>Translated_713_residues
MATFFVIKRDGSRTGFEIQRIINAIKKAAQAVNIEDERYCHTMGQQVCNDIFTRYQQEIDISHIQKIVENTLMAGKYPEI
ARAYIEYRHDRDLAREKRSQLTKEIEGLIQQSNVELLNENANKDAKVIPTQRDLLAGIVAKHYAKRYILPRDVVDAHEKG
EIHYHDLDYAPFFPMFNCMLVDLKGMLSNGFKMGNAEIEPPKSITTATAVSAQIIAQVASHIYGGTTINRIDEILAPYVQ
LSYEKHLKNAAEWKVPEPEAYAKALIEKECFDAFQSLEYEVNTLHTSNGQTPFVTFGFGLGTTWQSRLIQRSILKNRIRG
LGKNHKTPVFPKLVFTIKKGINHSPSDPNYDIKQLALECASKRMYPDILNYDQVVKVTGSFKAPMGCRSFLGAYQEQGQE
IHDGRNNLGVVSLNLPRIAIEANATNSAQSAVEFYKILDQRLAIAKKALMTRIARLEHTKARVAPILYMEGACGVRLKAD
DNVAQIFKNGRASISLGYIGIHETINALYGDKHIYDDEQLRQKGIEIVEYLHETVQRWKQETGYAFSLYSTPSENLCDRF
CRLDTKQFGLIEGVTDKGYYTNSYHLDVEKKVNPYDKIDFELPYPPFASGGFICYGEYPNVQHNLKALEDVWDYSYDRVP
YYGTNTPIDECYECGFSGEFECTSKGFTCPKCGNHDSEKVSVTRRVCGYLGSPDARPFNAGKQEEVKRRVKHL
>Mature_712_residues
ATFFVIKRDGSRTGFEIQRIINAIKKAAQAVNIEDERYCHTMGQQVCNDIFTRYQQEIDISHIQKIVENTLMAGKYPEIA
RAYIEYRHDRDLAREKRSQLTKEIEGLIQQSNVELLNENANKDAKVIPTQRDLLAGIVAKHYAKRYILPRDVVDAHEKGE
IHYHDLDYAPFFPMFNCMLVDLKGMLSNGFKMGNAEIEPPKSITTATAVSAQIIAQVASHIYGGTTINRIDEILAPYVQL
SYEKHLKNAAEWKVPEPEAYAKALIEKECFDAFQSLEYEVNTLHTSNGQTPFVTFGFGLGTTWQSRLIQRSILKNRIRGL
GKNHKTPVFPKLVFTIKKGINHSPSDPNYDIKQLALECASKRMYPDILNYDQVVKVTGSFKAPMGCRSFLGAYQEQGQEI
HDGRNNLGVVSLNLPRIAIEANATNSAQSAVEFYKILDQRLAIAKKALMTRIARLEHTKARVAPILYMEGACGVRLKADD
NVAQIFKNGRASISLGYIGIHETINALYGDKHIYDDEQLRQKGIEIVEYLHETVQRWKQETGYAFSLYSTPSENLCDRFC
RLDTKQFGLIEGVTDKGYYTNSYHLDVEKKVNPYDKIDFELPYPPFASGGFICYGEYPNVQHNLKALEDVWDYSYDRVPY
YGTNTPIDECYECGFSGEFECTSKGFTCPKCGNHDSEKVSVTRRVCGYLGSPDARPFNAGKQEEVKRRVKHL

Specific function: Unknown

COG id: COG1328

COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glycine radical domain [H]

Homologues:

Organism=Escherichia coli, GI1790686, Length=712, Percent_Identity=76.123595505618, Blast_Score=1165, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005144
- InterPro:   IPR001150
- InterPro:   IPR019777
- InterPro:   IPR012833 [H]

Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]

EC number: =1.17.4.2 [H]

Molecular weight: Translated: 81016; Mature: 80885

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS51161 ATP_CONE ; PS00850 GLY_RADICAL_1 ; PS51149 GLY_RADICAL_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATFFVIKRDGSRTGFEIQRIINAIKKAAQAVNIEDERYCHTMGQQVCNDIFTRYQQEID
CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
ISHIQKIVENTLMAGKYPEIARAYIEYRHDRDLAREKRSQLTKEIEGLIQQSNVELLNEN
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCC
ANKDAKVIPTQRDLLAGIVAKHYAKRYILPRDVVDAHEKGEIHYHDLDYAPFFPMFNCML
CCCCCEECCCHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCEEEECCCCCCHHHHHHHHH
VDLKGMLSNGFKMGNAEIEPPKSITTATAVSAQIIAQVASHIYGGTTINRIDEILAPYVQ
HHHHHHHHCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LSYEKHLKNAAEWKVPEPEAYAKALIEKECFDAFQSLEYEVNTLHTSNGQTPFVTFGFGL
HHHHHHHCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEEEECCC
GTTWQSRLIQRSILKNRIRGLGKNHKTPVFPKLVFTIKKGINHSPSDPNYDIKQLALECA
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
SKRMYPDILNYDQVVKVTGSFKAPMGCRSFLGAYQEQGQEIHDGRNNLGVVSLNLPRIAI
HHCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCHHHCCCCCCEEEEECCCEEEE
EANATNSAQSAVEFYKILDQRLAIAKKALMTRIARLEHTKARVAPILYMEGACGVRLKAD
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCEEEECC
DNVAQIFKNGRASISLGYIGIHETINALYGDKHIYDDEQLRQKGIEIVEYLHETVQRWKQ
CHHHHHHHCCCCEEEEEEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ETGYAFSLYSTPSENLCDRFCRLDTKQFGLIEGVTDKGYYTNSYHLDVEKKVNPYDKIDF
HCCCEEEEECCCCHHHHHHHHHCCCHHHCCEECCCCCCEECCEEEEEECCCCCCCCCCCE
ELPYPPFASGGFICYGEYPNVQHNLKALEDVWDYSYDRVPYYGTNTPIDECYECGFSGEF
ECCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCE
ECTSKGFTCPKCGNHDSEKVSVTRRVCGYLGSPDARPFNAGKQEEVKRRVKHL
EECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
ATFFVIKRDGSRTGFEIQRIINAIKKAAQAVNIEDERYCHTMGQQVCNDIFTRYQQEID
CEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
ISHIQKIVENTLMAGKYPEIARAYIEYRHDRDLAREKRSQLTKEIEGLIQQSNVELLNEN
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCC
ANKDAKVIPTQRDLLAGIVAKHYAKRYILPRDVVDAHEKGEIHYHDLDYAPFFPMFNCML
CCCCCEECCCHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCEEEECCCCCCHHHHHHHHH
VDLKGMLSNGFKMGNAEIEPPKSITTATAVSAQIIAQVASHIYGGTTINRIDEILAPYVQ
HHHHHHHHCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LSYEKHLKNAAEWKVPEPEAYAKALIEKECFDAFQSLEYEVNTLHTSNGQTPFVTFGFGL
HHHHHHHCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEEEECCC
GTTWQSRLIQRSILKNRIRGLGKNHKTPVFPKLVFTIKKGINHSPSDPNYDIKQLALECA
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
SKRMYPDILNYDQVVKVTGSFKAPMGCRSFLGAYQEQGQEIHDGRNNLGVVSLNLPRIAI
HHCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCHHHCCCCCCEEEEECCCEEEE
EANATNSAQSAVEFYKILDQRLAIAKKALMTRIARLEHTKARVAPILYMEGACGVRLKAD
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCEEEECC
DNVAQIFKNGRASISLGYIGIHETINALYGDKHIYDDEQLRQKGIEIVEYLHETVQRWKQ
CHHHHHHHCCCCEEEEEEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ETGYAFSLYSTPSENLCDRFCRLDTKQFGLIEGVTDKGYYTNSYHLDVEKKVNPYDKIDF
HCCCEEEEECCCCHHHHHHHHHCCCHHHCCEECCCCCCEECCEEEEEECCCCCCCCCCCE
ELPYPPFASGGFICYGEYPNVQHNLKALEDVWDYSYDRVPYYGTNTPIDECYECGFSGEF
ECCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCE
ECTSKGFTCPKCGNHDSEKVSVTRRVCGYLGSPDARPFNAGKQEEVKRRVKHL
EECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]