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The map label for this gene is rpoZ

Identifier: 15602786

GI number: 15602786

Start: 1087801

End: 1088070

Strand: Reverse

Name: rpoZ

Synonym: PM0921

Alternate gene names: 15602786

Gene position: 1088070-1087801 (Counterclockwise)

Preceding gene: 15602787

Following gene: 15602785

Centisome position: 48.2

GC content: 38.89

Gene sequence:

>270_bases
ATGGCTCGTGTCACAGTACAAGGTGCGGTAGAAAAAATTGGTAACCGTTTTGATTTAATTTTAACCGCAGCACGTCGCGC
AAGACAATTACAGTTACATATTCGTGAACCTCTAGTACCAGAAGATAACGATAAACCAACCGTGATTGCCCTACGTGAAA
TTGAGAAAGGGTTGATTAATAACGAGATTATGAATGCCCAAGAGCGTTATGATGCGTTGGAAAAAGAAAACTCGGAATTA
CACGCTGTTTCTTTATTATCTAATCAGTAA

Upstream 100 bases:

>100_bases
TCAGGCGTTGATTGAACAATTGCTAGCAAAATAGACCTCACTTTAGTATCATATGACCCCTTTTTAACATTTTTTTGACT
AATAAGAGATGGAGTAATAT

Downstream 100 bases:

>100_bases
AAGTGCGGTCATTTTGCACAACGTTTTCAGAAAATCACATTGAACTAAGTTAGGTGTCCCTTGTATCTTTTTGAAAGTCT
AAATCGCATTATTGAGGCGT

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 89; Mature: 88

Protein sequence:

>89_residues
MARVTVQGAVEKIGNRFDLILTAARRARQLQLHIREPLVPEDNDKPTVIALREIEKGLINNEIMNAQERYDALEKENSEL
HAVSLLSNQ

Sequences:

>Translated_89_residues
MARVTVQGAVEKIGNRFDLILTAARRARQLQLHIREPLVPEDNDKPTVIALREIEKGLINNEIMNAQERYDALEKENSEL
HAVSLLSNQ
>Mature_88_residues
ARVTVQGAVEKIGNRFDLILTAARRARQLQLHIREPLVPEDNDKPTVIALREIEKGLINNEIMNAQERYDALEKENSELH
AVSLLSNQ

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

Organism=Escherichia coli, GI1790081, Length=65, Percent_Identity=76.9230769230769, Blast_Score=104, Evalue=9e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_PASMU (Q9CMB2)

Other databases:

- EMBL:   AE004439
- RefSeq:   NP_245858.1
- GeneID:   1244268
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM0921
- NMPDR:   fig|272843.1.peg.921
- HOGENOM:   HBG742204
- OMA:   EENDKYT
- ProtClustDB:   PRK00392
- BioCyc:   PMUL272843:PM0921-MONOMER
- BRENDA:   2.7.7.6
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 10117; Mature: 9986

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVQGAVEKIGNRFDLILTAARRARQLQLHIREPLVPEDNDKPTVIALREIEKGLIN
CCEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHC
NEIMNAQERYDALEKENSELHAVSLLSNQ
HHHHCHHHHHHHHHCCCCCEEEEEECCCC
>Mature Secondary Structure 
ARVTVQGAVEKIGNRFDLILTAARRARQLQLHIREPLVPEDNDKPTVIALREIEKGLIN
CEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHC
NEIMNAQERYDALEKENSELHAVSLLSNQ
HHHHCHHHHHHHHHCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100