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The map label for this gene is speF [H]

Identifier: 15602671

GI number: 15602671

Start: 952545

End: 954707

Strand: Direct

Name: speF [H]

Synonym: PM0806

Alternate gene names: 15602671

Gene position: 952545-954707 (Clockwise)

Preceding gene: 15602670

Following gene: 15602672

Centisome position: 42.19

GC content: 39.16

Gene sequence:

>2163_bases
ATGCTAAATTTAAAAATTGCATATAGCCCATTAATTCGACCTTATTTTCATACAAATAGAGAACTCGTTTCTGTTCAAGA
AACAGATTTCACCGACATTGGTGCAATTATCCTGAGTTCTGAAGATATTGAAGATTATATTGATAGTATACAAGCAACTG
AATTTAATATTCCGGTCTTTGTTGCTGTCATTGAAGGTCAATTTTTAGATCCTCAATTCTTTGACAAAGTCTATCACGTT
CAAGATCTCAACAACTACGACATCAACCTATACAGTCGCCAAATTGAAACTGCGGCGCGGTTTTACGAAGAAAAAATCCT
CCCACCTTTCTTTAAAATGCTAAGTGAATATGTGGAAATGGGGAATTCTGCTTTTGATTGTCCGGGACACCAAGGTGGAC
AATATTTCCGTAAACATCCTGCAGGACGTTATCTCTATGATTTCTACGGTGAAAATATTTTCCGCTCAGATATCTGTAAT
GCCGATGTAAAATTAGGCGATTTGCTAATCCATGAAGGAGCCGCTTGTGATGCTCAAAAACACGCTGCTCAAGTCTTTAA
TGCTGATAAAACCTACTTCGTCTTAAATGGGACATCTTCTGCAAATAAAGTCGTCACCAATGCGTTACTCACACCGGGTG
ATCTTGTGCTCTTTGATCGTAACAATCACAAATCTATCCATCACGGTGCATTAATTCAAGCTGGTGCTACCCCTGTTTAT
TTGGAAACTGCGCGTAATCCATTTGGTTTTATCGGTGGGATCGATAGCCATTGTTTTGATGAAGATTATTTGAAATCTTT
AATTAAAGATGTTGCGCCTGAAAAACTAACACAAGCACGTCCTTTCCGTTTAGCCGTTATTCAGCTCGGCACTTATGACG
GAACCATCTATAATGCGCGCCAAGTCGTAGATAAAATTGGTCATTTATGTGACTACATCTTGTTTGATTCTGCGTGGGTA
GGTTATGAACAATTCATTCCAATGATGAAAGATTGCTCACCGCTCTTGCTTGAATTAAATGAAAATGATCCCGGCATCAT
CGTGACACAATCAGTACACAAACAACAAGCCGGCTTCTCACAAGCCTCACAAATTCACAAAAAAGACAAGCACATTAAAG
GTCAACAGCGCTACTGTAATCATAAACGCTTTAATAATGCATTCATGTTACACGCCTCCACCAGCCCATTCTACCCTCTT
TTTGCCACACTTGATGTCAATGCAAAAATTCAAGGTACCCCTGCGGGTATTCGTTTATGGCATGACTGTGTCAAAATCGG
GATAGAAGCACGTAAAATGGTGCTGAATAGTTGTGATCTGATCAAACCGTTTATTCCGCCTTATGTCAATGGCAAAAAAT
GGCAAGACTACGATACAGAAGAAATGGCAAATGATTTAACATTCTTCAAATTCCATGCTGATGATAAATGGCATCAATTT
GAAGGCTATGTAGATAACCAATATTTTGTTGATCCATGTAAATTCATGCTAACGACGCCGGGTATTGATATTGAAACAGG
TGAATACGAAGACTTCGGTGTCCCTGCTACGATTCTTGCTAATTATTTACGTGAAAACGGCATTATTCCGGAAAAATGTG
ACTTAAACTCAATTCTCTTCTTATTAACGCCAGCAGAAACCCTCACCAAAATGCAAAGTTTGGTTGCACAAATTGCGGCA
TTTGAACAACACATCAAAAAAGATTCCTTACTAAAAGAAGTCTTACCAAGTGTTTATCACAACAATGAAAAACGCTATGA
AGGTTATACCATCCGTCGTCTTTGCCAAGAAATGCATGATTTGTATGTCAGCCGTAACGTGAAAACTTTACAACGCAACT
TATTCAGAAAAGCGACCTTGCCTGAATATGTGATGAATCCACATCAAGCTAATCTTGAATTTGTTCGTAATCGTGTAGAA
CTGGTTCCACTAACCGAAATCGTTAATCGCATTGCGGCAGAAGGAGCACTTCCTTATCCACCGGGTGTGCTTTGTGTCGT
ACCGGGTGAAAAATGGAGTCAGACTGCACAGGAATATTTCTTAGCACTCGAAGAAGGCATTAATTTATTACCAGGTTTCG
CACCAGAAATTCAAGGGGTATATCTACAACAAGATGCAGATGGACGTATTCGTGCTTATGGCTACGTATTAACTGAAAAC
TAA

Upstream 100 bases:

>100_bases
TAATAAGAACTGAATTAATCAACATATTAATTAAAATCCTGATCCGCCATTTAATAATAGCGGAGGGAATTTTATTACTT
AAATAAACAAGGAGTCATCT

Downstream 100 bases:

>100_bases
ATCATTAATTAAAAAAGTACAGTATGCATTTACTGTACTTTTATGAGGATACAATTATGAGTGCAAGAAATAATAAAATT
GGTGTTGTTCAACTCACTAT

Product: ornithine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 720; Mature: 720

Protein sequence:

>720_residues
MLNLKIAYSPLIRPYFHTNRELVSVQETDFTDIGAIILSSEDIEDYIDSIQATEFNIPVFVAVIEGQFLDPQFFDKVYHV
QDLNNYDINLYSRQIETAARFYEEKILPPFFKMLSEYVEMGNSAFDCPGHQGGQYFRKHPAGRYLYDFYGENIFRSDICN
ADVKLGDLLIHEGAACDAQKHAAQVFNADKTYFVLNGTSSANKVVTNALLTPGDLVLFDRNNHKSIHHGALIQAGATPVY
LETARNPFGFIGGIDSHCFDEDYLKSLIKDVAPEKLTQARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWV
GYEQFIPMMKDCSPLLLELNENDPGIIVTQSVHKQQAGFSQASQIHKKDKHIKGQQRYCNHKRFNNAFMLHASTSPFYPL
FATLDVNAKIQGTPAGIRLWHDCVKIGIEARKMVLNSCDLIKPFIPPYVNGKKWQDYDTEEMANDLTFFKFHADDKWHQF
EGYVDNQYFVDPCKFMLTTPGIDIETGEYEDFGVPATILANYLRENGIIPEKCDLNSILFLLTPAETLTKMQSLVAQIAA
FEQHIKKDSLLKEVLPSVYHNNEKRYEGYTIRRLCQEMHDLYVSRNVKTLQRNLFRKATLPEYVMNPHQANLEFVRNRVE
LVPLTEIVNRIAAEGALPYPPGVLCVVPGEKWSQTAQEYFLALEEGINLLPGFAPEIQGVYLQQDADGRIRAYGYVLTEN

Sequences:

>Translated_720_residues
MLNLKIAYSPLIRPYFHTNRELVSVQETDFTDIGAIILSSEDIEDYIDSIQATEFNIPVFVAVIEGQFLDPQFFDKVYHV
QDLNNYDINLYSRQIETAARFYEEKILPPFFKMLSEYVEMGNSAFDCPGHQGGQYFRKHPAGRYLYDFYGENIFRSDICN
ADVKLGDLLIHEGAACDAQKHAAQVFNADKTYFVLNGTSSANKVVTNALLTPGDLVLFDRNNHKSIHHGALIQAGATPVY
LETARNPFGFIGGIDSHCFDEDYLKSLIKDVAPEKLTQARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWV
GYEQFIPMMKDCSPLLLELNENDPGIIVTQSVHKQQAGFSQASQIHKKDKHIKGQQRYCNHKRFNNAFMLHASTSPFYPL
FATLDVNAKIQGTPAGIRLWHDCVKIGIEARKMVLNSCDLIKPFIPPYVNGKKWQDYDTEEMANDLTFFKFHADDKWHQF
EGYVDNQYFVDPCKFMLTTPGIDIETGEYEDFGVPATILANYLRENGIIPEKCDLNSILFLLTPAETLTKMQSLVAQIAA
FEQHIKKDSLLKEVLPSVYHNNEKRYEGYTIRRLCQEMHDLYVSRNVKTLQRNLFRKATLPEYVMNPHQANLEFVRNRVE
LVPLTEIVNRIAAEGALPYPPGVLCVVPGEKWSQTAQEYFLALEEGINLLPGFAPEIQGVYLQQDADGRIRAYGYVLTEN
>Mature_720_residues
MLNLKIAYSPLIRPYFHTNRELVSVQETDFTDIGAIILSSEDIEDYIDSIQATEFNIPVFVAVIEGQFLDPQFFDKVYHV
QDLNNYDINLYSRQIETAARFYEEKILPPFFKMLSEYVEMGNSAFDCPGHQGGQYFRKHPAGRYLYDFYGENIFRSDICN
ADVKLGDLLIHEGAACDAQKHAAQVFNADKTYFVLNGTSSANKVVTNALLTPGDLVLFDRNNHKSIHHGALIQAGATPVY
LETARNPFGFIGGIDSHCFDEDYLKSLIKDVAPEKLTQARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWV
GYEQFIPMMKDCSPLLLELNENDPGIIVTQSVHKQQAGFSQASQIHKKDKHIKGQQRYCNHKRFNNAFMLHASTSPFYPL
FATLDVNAKIQGTPAGIRLWHDCVKIGIEARKMVLNSCDLIKPFIPPYVNGKKWQDYDTEEMANDLTFFKFHADDKWHQF
EGYVDNQYFVDPCKFMLTTPGIDIETGEYEDFGVPATILANYLRENGIIPEKCDLNSILFLLTPAETLTKMQSLVAQIAA
FEQHIKKDSLLKEVLPSVYHNNEKRYEGYTIRRLCQEMHDLYVSRNVKTLQRNLFRKATLPEYVMNPHQANLEFVRNRVE
LVPLTEIVNRIAAEGALPYPPGVLCVVPGEKWSQTAQEYFLALEEGINLLPGFAPEIQGVYLQQDADGRIRAYGYVLTEN

Specific function: Spermidine biosynthesis from ornithine. [C]

COG id: COG1982

COG function: function code E; Arginine/lysine/ornithine decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-I family [H]

Homologues:

Organism=Escherichia coli, GI87082193, Length=721, Percent_Identity=66.2968099861304, Blast_Score=997, Evalue=0.0,
Organism=Escherichia coli, GI1786909, Length=718, Percent_Identity=65.3203342618384, Blast_Score=995, Evalue=0.0,
Organism=Escherichia coli, GI1790573, Length=628, Percent_Identity=36.1464968152866, Blast_Score=333, Evalue=3e-92,
Organism=Escherichia coli, GI221142684, Length=728, Percent_Identity=29.6703296703297, Blast_Score=326, Evalue=3e-90,
Organism=Escherichia coli, GI1786384, Length=640, Percent_Identity=34.21875, Blast_Score=315, Evalue=8e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR005308
- InterPro:   IPR011193
- InterPro:   IPR000310
- InterPro:   IPR008286
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01276 OKR_DC_1; PF03711 OKR_DC_1_C; PF03709 OKR_DC_1_N [H]

EC number: =4.1.1.17 [H]

Molecular weight: Translated: 82081; Mature: 82081

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: PS00703 OKR_DC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNLKIAYSPLIRPYFHTNRELVSVQETDFTDIGAIILSSEDIEDYIDSIQATEFNIPVF
CEEEEEECCCCCCHHHCCCCEEEEEECCCCCHHCEEEECCCHHHHHHHHHHCCCCCCCEE
VAVIEGQFLDPQFFDKVYHVQDLNNYDINLYSRQIETAARFYEEKILPPFFKMLSEYVEM
EEEECCCCCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
GNSAFDCPGHQGGQYFRKHPAGRYLYDFYGENIFRSDICNADVKLGDLLIHEGAACDAQK
CCCCCCCCCCCCCHHHHHCCCCCCHHHHHCCCHHHHHCCCCCCEECCEEEECCCCCCHHH
HAAQVFNADKTYFVLNGTSSANKVVTNALLTPGDLVLFDRNNHKSIHHGALIQAGATPVY
HHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEECCCCEEE
LETARNPFGFIGGIDSHCFDEDYLKSLIKDVAPEKLTQARPFRLAVIQLGTYDGTIYNAR
EECCCCCCCEECCCCCCCCCHHHHHHHHHHHCHHHHHCCCCEEEEEEEEECCCCCCHHHH
QVVDKIGHLCDYILFDSAWVGYEQFIPMMKDCSPLLLELNENDPGIIVTQSVHKQQAGFS
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEECCCCCCEEEECHHHHHHCCHH
QASQIHKKDKHIKGQQRYCNHKRFNNAFMLHASTSPFYPLFATLDVNAKIQGTPAGIRLW
HHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEECEEEECCCHHHHHH
HDCVKIGIEARKMVLNSCDLIKPFIPPYVNGKKWQDYDTEEMANDLTFFKFHADDKWHQF
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCEEEEEECCCCCHHC
EGYVDNQYFVDPCKFMLTTPGIDIETGEYEDFGVPATILANYLRENGIIPEKCDLNSILF
CCEECCCEEECCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEE
LLTPAETLTKMQSLVAQIAAFEQHIKKDSLLKEVLPSVYHNNEKRYEGYTIRRLCQEMHD
EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHH
LYVSRNVKTLQRNLFRKATLPEYVMNPHQANLEFVRNRVELVPLTEIVNRIAAEGALPYP
HHHHCCHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHEEEHHHHHHHHHHCCCCCCC
PGVLCVVPGEKWSQTAQEYFLALEEGINLLPGFAPEIQGVYLQQDADGRIRAYGYVLTEN
CCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEECC
>Mature Secondary Structure
MLNLKIAYSPLIRPYFHTNRELVSVQETDFTDIGAIILSSEDIEDYIDSIQATEFNIPVF
CEEEEEECCCCCCHHHCCCCEEEEEECCCCCHHCEEEECCCHHHHHHHHHHCCCCCCCEE
VAVIEGQFLDPQFFDKVYHVQDLNNYDINLYSRQIETAARFYEEKILPPFFKMLSEYVEM
EEEECCCCCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
GNSAFDCPGHQGGQYFRKHPAGRYLYDFYGENIFRSDICNADVKLGDLLIHEGAACDAQK
CCCCCCCCCCCCCHHHHHCCCCCCHHHHHCCCHHHHHCCCCCCEECCEEEECCCCCCHHH
HAAQVFNADKTYFVLNGTSSANKVVTNALLTPGDLVLFDRNNHKSIHHGALIQAGATPVY
HHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEECCCCEEE
LETARNPFGFIGGIDSHCFDEDYLKSLIKDVAPEKLTQARPFRLAVIQLGTYDGTIYNAR
EECCCCCCCEECCCCCCCCCHHHHHHHHHHHCHHHHHCCCCEEEEEEEEECCCCCCHHHH
QVVDKIGHLCDYILFDSAWVGYEQFIPMMKDCSPLLLELNENDPGIIVTQSVHKQQAGFS
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEECCCCCCEEEECHHHHHHCCHH
QASQIHKKDKHIKGQQRYCNHKRFNNAFMLHASTSPFYPLFATLDVNAKIQGTPAGIRLW
HHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEECEEEECCCHHHHHH
HDCVKIGIEARKMVLNSCDLIKPFIPPYVNGKKWQDYDTEEMANDLTFFKFHADDKWHQF
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCEEEEEECCCCCHHC
EGYVDNQYFVDPCKFMLTTPGIDIETGEYEDFGVPATILANYLRENGIIPEKCDLNSILF
CCEECCCEEECCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEE
LLTPAETLTKMQSLVAQIAAFEQHIKKDSLLKEVLPSVYHNNEKRYEGYTIRRLCQEMHD
EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHH
LYVSRNVKTLQRNLFRKATLPEYVMNPHQANLEFVRNRVELVPLTEIVNRIAAEGALPYP
HHHHCCHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHEEEHHHHHHHHHHCCCCCCC
PGVLCVVPGEKWSQTAQEYFLALEEGINLLPGFAPEIQGVYLQQDADGRIRAYGYVLTEN
CCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]