| Definition | Pasteurella multocida subsp. multocida str. Pm70, complete genome. |
|---|---|
| Accession | NC_002663 |
| Length | 2,257,487 |
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The map label for this gene is yddB [C]
Identifier: 15602668
GI number: 15602668
Start: 946589
End: 948967
Strand: Direct
Name: yddB [C]
Synonym: PM0803
Alternate gene names: 15602668
Gene position: 946589-948967 (Clockwise)
Preceding gene: 15602660
Following gene: 15602669
Centisome position: 41.93
GC content: 38.63
Gene sequence:
>2379_bases ATGGAGAAAATTGACATGGAATCCGCAAAAAATCCACTCAAAAAGACGACACTTGCACTCCTCTGTTGTTCTACCGCCTT CTCGCTTTCCGCAAAAACCGATACGGACTCCGATAAAAATCACTTTCTGACGGAAATTGTCGTGTATGCGGATCAAAATA AATCAATGAGTTCTACACAGAGTGTCACTCAAGATGACATGAAAAAAAGCCCTGTCACAAATGGTAATATTACTGACTAT TTACGTTCAAATCCGCATGTGCGTTATGAGAATAGCGATCAAAATGGATTGCAACGAGGTGAAATTAAACCCGAAAACAT TTCAATTAATGGTGCAGATTATCAGCAGACTACTTTTTTTGTCGATAATGTAAATATCAATAATGATATGGGATTTGGTA GTGATCTTTTTGACGGCACCATGGCAACTGTCCCCTTTGCCAATCATTCTCAAGGCTACTTTTTTGATGCCAATCTGCTC TCTTCAATTGTAGTGCATGACAGTAATGTTTCTGCCAGCTTAGGAGGATTTGCGGGGGGAGCCGTCGTGGCGAAAACCAA ACAATATGATGGGAAAGATCGGTTAAAATTTAGTTATCGTACAACTGATGCCTCATGGGCGAAATTTAAAGTAGAAGACA AAGATCTTGAACGTTTTAAAAATGCGATTCCTGAAGGGTCGGTCGCCGAATTTCAACCTAAGTATTCTAAACACTTTTTC AATATCACGGCAGAAAAAGGGTTAAGTGAAAATTTAGGTATGGTGATCGGATTAAGTCGTAGAACATCAAGTATCCAGCA ATCACGTCAAATTAATCCACAAGGTGATCGTGATAAACAAACACATACAAGACGTTCAGACAATGCGTTACTGAATTTTA ATCTGACACCAAATGACAAACACCGTTTCGAACTCGGTTTCAGATACTCAAATTATCGTGAGCGTAAATTCTTTAATACC AATATAGACAGTAATGTTTTTGACTATCACCGTGCTTATGGTGTGACTTTCTCTTGGATAAATGCCCTTCAGTCTGGCAT TCTCACGACGACACTCGCCTATGATAACTTTGATGACACAAGAAAATCAGCTTCGACTTCTATGAAAACTATTATCGAAG ATGAAAATGACTACACTCTTGGAGGGATGGGCAATAGCCAATTAAATCAAAAAAACAGTCATTTTTCCCTTGAATATGCC ATGAATTCTTTTGATTTAAGCCACATTAATCACTCTATATCACTAGGAAGTGTGTTCCAACACACACAATACCGTTTTCA TCGAGAATCTGATGCTGAGGCAGAGATTATTAATAGAATAGACCTTGGAAACGGAAAGATAGAAATTAAATCAAGTAATT TAGCCAAAAAAGGAACCGTAAAAACACGTTATCAAAATATCGCACTTTACGTGGAAGATTTAATGACGTGGAAAAATCTC GAATTTCGGGCGGGACTTCGTCTTGAACGTGATAATTATTTAAAAAACACGAATTTGGCGCCAAGAACTGTTTTTCGTTA TAAACCATTTGAAGACACTGCATTCAGTGTGGGTTGGAACCGTTACTACGGACGTTCCTTTGCCTCAATGAAATTATCTG AAGGTATCTTCAAATTAGATGGTCATGATACCTTCCGTTATAAAGACCTTAGCCAATTTAAAACCCCTTATTCAGACGAA CTGAGCTTTGGTGTAGAACAATATGTTGCTAATCTCGCCTTTCACTTGAAATACATTTTACGTGATAACAAACAACGTAT TGTTTTACAAGAAGAAGACGTCATGTTAAATGGAGAAAGGAAAAAACTCCGCTATTACCAACGAGGAAAAGACTACAAAA CGAATGTGTTAACCTTCCAAATTAACACACAAGCGCCTTGGGAGCTTGGTCCAACACGCTGGACAAGTGCAGTGGCATTT GATTGGTTAGATAGCAAAGCTATCGATCATGGCAGGGGCTATAACGGTTCGACACCTGTGATTTTAGACGGGAAATTAAT GACCTATGAGCAAATGTTGAAAAAAGTCAATGCTTACAAAGAAACATGGGGATTACGTTTAAATCTTGACATGTTTGTTC CAAGATTTGATCTTTCTTGGGCCAATACAATTTATGTCAAGCCACCAACAACCTTAACCGAACGCGTTAGCAGTAATACA CCTGAGGTATATCGTAGCTATGATTATGGTACTTATACACAATGGGATACCAGTCTTCGCTGGCAGCCAACTTTCGCAGA AAAACACCGTCCTTATATTAAATTAGATGTACTTAATGTGTTAAATAAAACACGTAAAGGCGCGGGTCCAAATGGACAAG ATCTCGGCATCTACACCCCCGGTCGTGAGTTCTGGCTTGAAGTTGGTTACGAATTCTAA
Upstream 100 bases:
>100_bases CTCATTTTGTGGACTTTGTCACATTTTTAATCACTCTTTTCTCTTGCAACCTGTTTATTTTATAAATAGAATTAATAATA GTTATCATTATTAAATTTAA
Downstream 100 bases:
>100_bases CTTCTCCACACCTGTCAAAAAACACGACGTGTTATTCACATAACGCGTCGCGTTTATTTATACACAGATGAGATTAAAAA TAATGAAAAAATTGACCGCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 792; Mature: 792
Protein sequence:
>792_residues MEKIDMESAKNPLKKTTLALLCCSTAFSLSAKTDTDSDKNHFLTEIVVYADQNKSMSSTQSVTQDDMKKSPVTNGNITDY LRSNPHVRYENSDQNGLQRGEIKPENISINGADYQQTTFFVDNVNINNDMGFGSDLFDGTMATVPFANHSQGYFFDANLL SSIVVHDSNVSASLGGFAGGAVVAKTKQYDGKDRLKFSYRTTDASWAKFKVEDKDLERFKNAIPEGSVAEFQPKYSKHFF NITAEKGLSENLGMVIGLSRRTSSIQQSRQINPQGDRDKQTHTRRSDNALLNFNLTPNDKHRFELGFRYSNYRERKFFNT NIDSNVFDYHRAYGVTFSWINALQSGILTTTLAYDNFDDTRKSASTSMKTIIEDENDYTLGGMGNSQLNQKNSHFSLEYA MNSFDLSHINHSISLGSVFQHTQYRFHRESDAEAEIINRIDLGNGKIEIKSSNLAKKGTVKTRYQNIALYVEDLMTWKNL EFRAGLRLERDNYLKNTNLAPRTVFRYKPFEDTAFSVGWNRYYGRSFASMKLSEGIFKLDGHDTFRYKDLSQFKTPYSDE LSFGVEQYVANLAFHLKYILRDNKQRIVLQEEDVMLNGERKKLRYYQRGKDYKTNVLTFQINTQAPWELGPTRWTSAVAF DWLDSKAIDHGRGYNGSTPVILDGKLMTYEQMLKKVNAYKETWGLRLNLDMFVPRFDLSWANTIYVKPPTTLTERVSSNT PEVYRSYDYGTYTQWDTSLRWQPTFAEKHRPYIKLDVLNVLNKTRKGAGPNGQDLGIYTPGREFWLEVGYEF
Sequences:
>Translated_792_residues MEKIDMESAKNPLKKTTLALLCCSTAFSLSAKTDTDSDKNHFLTEIVVYADQNKSMSSTQSVTQDDMKKSPVTNGNITDY LRSNPHVRYENSDQNGLQRGEIKPENISINGADYQQTTFFVDNVNINNDMGFGSDLFDGTMATVPFANHSQGYFFDANLL SSIVVHDSNVSASLGGFAGGAVVAKTKQYDGKDRLKFSYRTTDASWAKFKVEDKDLERFKNAIPEGSVAEFQPKYSKHFF NITAEKGLSENLGMVIGLSRRTSSIQQSRQINPQGDRDKQTHTRRSDNALLNFNLTPNDKHRFELGFRYSNYRERKFFNT NIDSNVFDYHRAYGVTFSWINALQSGILTTTLAYDNFDDTRKSASTSMKTIIEDENDYTLGGMGNSQLNQKNSHFSLEYA MNSFDLSHINHSISLGSVFQHTQYRFHRESDAEAEIINRIDLGNGKIEIKSSNLAKKGTVKTRYQNIALYVEDLMTWKNL EFRAGLRLERDNYLKNTNLAPRTVFRYKPFEDTAFSVGWNRYYGRSFASMKLSEGIFKLDGHDTFRYKDLSQFKTPYSDE LSFGVEQYVANLAFHLKYILRDNKQRIVLQEEDVMLNGERKKLRYYQRGKDYKTNVLTFQINTQAPWELGPTRWTSAVAF DWLDSKAIDHGRGYNGSTPVILDGKLMTYEQMLKKVNAYKETWGLRLNLDMFVPRFDLSWANTIYVKPPTTLTERVSSNT PEVYRSYDYGTYTQWDTSLRWQPTFAEKHRPYIKLDVLNVLNKTRKGAGPNGQDLGIYTPGREFWLEVGYEF >Mature_792_residues MEKIDMESAKNPLKKTTLALLCCSTAFSLSAKTDTDSDKNHFLTEIVVYADQNKSMSSTQSVTQDDMKKSPVTNGNITDY LRSNPHVRYENSDQNGLQRGEIKPENISINGADYQQTTFFVDNVNINNDMGFGSDLFDGTMATVPFANHSQGYFFDANLL SSIVVHDSNVSASLGGFAGGAVVAKTKQYDGKDRLKFSYRTTDASWAKFKVEDKDLERFKNAIPEGSVAEFQPKYSKHFF NITAEKGLSENLGMVIGLSRRTSSIQQSRQINPQGDRDKQTHTRRSDNALLNFNLTPNDKHRFELGFRYSNYRERKFFNT NIDSNVFDYHRAYGVTFSWINALQSGILTTTLAYDNFDDTRKSASTSMKTIIEDENDYTLGGMGNSQLNQKNSHFSLEYA MNSFDLSHINHSISLGSVFQHTQYRFHRESDAEAEIINRIDLGNGKIEIKSSNLAKKGTVKTRYQNIALYVEDLMTWKNL EFRAGLRLERDNYLKNTNLAPRTVFRYKPFEDTAFSVGWNRYYGRSFASMKLSEGIFKLDGHDTFRYKDLSQFKTPYSDE LSFGVEQYVANLAFHLKYILRDNKQRIVLQEEDVMLNGERKKLRYYQRGKDYKTNVLTFQINTQAPWELGPTRWTSAVAF DWLDSKAIDHGRGYNGSTPVILDGKLMTYEQMLKKVNAYKETWGLRLNLDMFVPRFDLSWANTIYVKPPTTLTERVSSNT PEVYRSYDYGTYTQWDTSLRWQPTFAEKHRPYIKLDVLNVLNKTRKGAGPNGQDLGIYTPGREFWLEVGYEF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli yddB [H]
Homologues:
Organism=Escherichia coli, GI1787771, Length=789, Percent_Identity=26.7427122940431, Blast_Score=264, Evalue=1e-71,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 [H]
Pfam domain/function: PF07715 Plug [H]
EC number: NA
Molecular weight: Translated: 90994; Mature: 90994
Theoretical pI: Translated: 8.89; Mature: 8.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKIDMESAKNPLKKTTLALLCCSTAFSLSAKTDTDSDKNHFLTEIVVYADQNKSMSSTQ CCCCCCHHHCCHHHHHHHHHHHHHHHHEEECCCCCCCCCHHEEEEEEEEECCCCCCCHHH SVTQDDMKKSPVTNGNITDYLRSNPHVRYENSDQNGLQRGEIKPENISINGADYQQTTFF HHHHHHHHHCCCCCCCHHHHHCCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCEEEEEE VDNVNINNDMGFGSDLFDGTMATVPFANHSQGYFFDANLLSSIVVHDSNVSASLGGFAGG EEECEECCCCCCCCHHCCCCEEEEECCCCCCCEEEEHHHHHEEEEECCCCCCCCCCCCCC AVVAKTKQYDGKDRLKFSYRTTDASWAKFKVEDKDLERFKNAIPEGSVAEFQPKYSKHFF EEEEECCCCCCCCCEEEEEECCCCCEEEEEECHHHHHHHHHHCCCCCCHHCCCCHHHEEE NITAEKGLSENLGMVIGLSRRTSSIQQSRQINPQGDRDKQTHTRRSDNALLNFNLTPNDK EEEHHCCCCCCCCEEEEECHHHHHHHHHHCCCCCCCCCHHHHCCCCCCEEEEEECCCCCC HRFELGFRYSNYRERKFFNTNIDSNVFDYHRAYGVTFSWINALQSGILTTTLAYDNFDDT CEEEEEEEECCCCCCEEECCCCCCCHHHHHHHHCCHHHHHHHHHCCCEEEEEEECCCCHH RKSASTSMKTIIEDENDYTLGGMGNSQLNQKNSHFSLEYAMNSFDLSHINHSISLGSVFQ HHHHHHHHHHEEECCCCEEECCCCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCHHHHHH HTQYRFHRESDAEAEIINRIDLGNGKIEIKSSNLAKKGTVKTRYQNIALYVEDLMTWKNL HHHHHCCCCCCCHHHHHHEEECCCCEEEEECCCCCCCCCCHHHHHHHEEEEHHHHHHCCC EFRAGLRLERDNYLKNTNLAPRTVFRYKPFEDTAFSVGWNRYYGRSFASMKLSEGIFKLD EEECCCEECCCCCCCCCCCCCCEEEEECCCCCCEEECCCHHHHCCCHHHEEHHCCEEEEC GHDTFRYKDLSQFKTPYSDELSFGVEQYVANLAFHLKYILRDNKQRIVLQEEDVMLNGER CCCCEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEECCEEECCCH KKLRYYQRGKDYKTNVLTFQINTQAPWELGPTRWTSAVAFDWLDSKAIDHGRGYNGSTPV HHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCHHHHHEEEHHHCCHHHHCCCCCCCCCCE ILDGKLMTYEQMLKKVNAYKETWGLRLNLDMFVPRFDLSWANTIYVKPPTTLTERVSSNT EECCCCHHHHHHHHHHHHHHHHCCEEEEEEEECEEECCCCCCEEEECCCCHHHHHHCCCC PEVYRSYDYGTYTQWDTSLRWQPTFAEKHRPYIKLDVLNVLNKTRKGAGPNGQDLGIYTP CHHHCCCCCCCEEECCCCEEECCCHHHHCCCEEEEHHHHHHHHHHCCCCCCCCCCEEECC GREFWLEVGYEF CHHEEEEECCCC >Mature Secondary Structure MEKIDMESAKNPLKKTTLALLCCSTAFSLSAKTDTDSDKNHFLTEIVVYADQNKSMSSTQ CCCCCCHHHCCHHHHHHHHHHHHHHHHEEECCCCCCCCCHHEEEEEEEEECCCCCCCHHH SVTQDDMKKSPVTNGNITDYLRSNPHVRYENSDQNGLQRGEIKPENISINGADYQQTTFF HHHHHHHHHCCCCCCCHHHHHCCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCEEEEEE VDNVNINNDMGFGSDLFDGTMATVPFANHSQGYFFDANLLSSIVVHDSNVSASLGGFAGG EEECEECCCCCCCCHHCCCCEEEEECCCCCCCEEEEHHHHHEEEEECCCCCCCCCCCCCC AVVAKTKQYDGKDRLKFSYRTTDASWAKFKVEDKDLERFKNAIPEGSVAEFQPKYSKHFF EEEEECCCCCCCCCEEEEEECCCCCEEEEEECHHHHHHHHHHCCCCCCHHCCCCHHHEEE NITAEKGLSENLGMVIGLSRRTSSIQQSRQINPQGDRDKQTHTRRSDNALLNFNLTPNDK EEEHHCCCCCCCCEEEEECHHHHHHHHHHCCCCCCCCCHHHHCCCCCCEEEEEECCCCCC HRFELGFRYSNYRERKFFNTNIDSNVFDYHRAYGVTFSWINALQSGILTTTLAYDNFDDT CEEEEEEEECCCCCCEEECCCCCCCHHHHHHHHCCHHHHHHHHHCCCEEEEEEECCCCHH RKSASTSMKTIIEDENDYTLGGMGNSQLNQKNSHFSLEYAMNSFDLSHINHSISLGSVFQ HHHHHHHHHHEEECCCCEEECCCCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCHHHHHH HTQYRFHRESDAEAEIINRIDLGNGKIEIKSSNLAKKGTVKTRYQNIALYVEDLMTWKNL HHHHHCCCCCCCHHHHHHEEECCCCEEEEECCCCCCCCCCHHHHHHHEEEEHHHHHHCCC EFRAGLRLERDNYLKNTNLAPRTVFRYKPFEDTAFSVGWNRYYGRSFASMKLSEGIFKLD EEECCCEECCCCCCCCCCCCCCEEEEECCCCCCEEECCCHHHHCCCHHHEEHHCCEEEEC GHDTFRYKDLSQFKTPYSDELSFGVEQYVANLAFHLKYILRDNKQRIVLQEEDVMLNGER CCCCEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEECCEEECCCH KKLRYYQRGKDYKTNVLTFQINTQAPWELGPTRWTSAVAFDWLDSKAIDHGRGYNGSTPV HHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCHHHHHEEEHHHCCHHHHCCCCCCCCCCE ILDGKLMTYEQMLKKVNAYKETWGLRLNLDMFVPRFDLSWANTIYVKPPTTLTERVSSNT EECCCCHHHHHHHHHHHHHHHHCCEEEEEEEECEEECCCCCCEEEECCCCHHHHHHCCCC PEVYRSYDYGTYTQWDTSLRWQPTFAEKHRPYIKLDVLNVLNKTRKGAGPNGQDLGIYTP CHHHCCCCCCCEEECCCCEEECCCHHHHCCCEEEEHHHHHHHHHHCCCCCCCCCCEEECC GREFWLEVGYEF CHHEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]