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The map label for this gene is rnfA

Identifier: 15602252

GI number: 15602252

Start: 456203

End: 456781

Strand: Reverse

Name: rnfA

Synonym: PM0387

Alternate gene names: 15602252

Gene position: 456781-456203 (Counterclockwise)

Preceding gene: 15602255

Following gene: 15602251

Centisome position: 20.23

GC content: 39.55

Gene sequence:

>579_bases
ATGACAGAATACATTCTCCTTATTATTAGTACAGCCTTAATTAATAACTTTGTCCTGGTGAAATTTCTAGGGCTTTGTCC
TTTTATGGGCGTTTCTAAAAAAATTGAAACCGCAATTGGCATGAGTTTAGCGACCATGTTTGTCCTTACTGTTGCCTCAA
TCTCTGCTTATTTAATTGATACCTATATTCTTACTCCCTTAAGCGCGACTTTTTTACGTACTCTCGTCTTTATTTTAGTA
ATTGCTGTGGTGGTACAATTTACTGAAATGGTAATCAATAAAACCAGTCCTACACTGTATCGTTTATTAGGGATTTTTCT
CCCACTCATTACGACAAATTGTGCTGTACTTGGCGTCGCACTGTTAAATATTAATCAAGCACACACCCTGACCCAATCAG
TGATTTATGGTTTTGGTGCGTCATTAGGTTTTGGCTTAGTGCTTGTTCTCTTTGCTGCCTTACGTGAACGCTTAGCCGCG
GCAGACGTGCCTCATGTTTTTAAAGGTGCCTCGATTGCCTTAATCACAGCAGGGTTAATGTCACTTGCCTTTATGGGCTT
TACAGGATTGGTGAGATGA

Upstream 100 bases:

>100_bases
CCTACCCCAAATTTTCTATTGTTCTTGAAACAATAAATAGCGATAATATGCCACTTAACTTCAGGGCATCTTTGAATCGT
CGCCCGAGAACATCATACTT

Downstream 100 bases:

>100_bases
TAATAACAACGGTCTATTTTATCCTCGTCGCTATCGCTGTATTAGCGTTGATATTTGGTGCAATCTTAGGCTTTGCTTCC
GTTAAACTGAAAGTAGAAGC

Product: Na(+)-translocating NADH-quinone reductase subunit E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MTEYILLIISTALINNFVLVKFLGLCPFMGVSKKIETAIGMSLATMFVLTVASISAYLIDTYILTPLSATFLRTLVFILV
IAVVVQFTEMVINKTSPTLYRLLGIFLPLITTNCAVLGVALLNINQAHTLTQSVIYGFGASLGFGLVLVLFAALRERLAA
ADVPHVFKGASIALITAGLMSLAFMGFTGLVR

Sequences:

>Translated_192_residues
MTEYILLIISTALINNFVLVKFLGLCPFMGVSKKIETAIGMSLATMFVLTVASISAYLIDTYILTPLSATFLRTLVFILV
IAVVVQFTEMVINKTSPTLYRLLGIFLPLITTNCAVLGVALLNINQAHTLTQSVIYGFGASLGFGLVLVLFAALRERLAA
ADVPHVFKGASIALITAGLMSLAFMGFTGLVR
>Mature_191_residues
TEYILLIISTALINNFVLVKFLGLCPFMGVSKKIETAIGMSLATMFVLTVASISAYLIDTYILTPLSATFLRTLVFILVI
AVVVQFTEMVINKTSPTLYRLLGIFLPLITTNCAVLGVALLNINQAHTLTQSVIYGFGASLGFGLVLVLFAALRERLAAA
DVPHVFKGASIALITAGLMSLAFMGFTGLVR

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG4657

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family

Homologues:

Organism=Escherichia coli, GI1787914, Length=192, Percent_Identity=76.0416666666667, Blast_Score=295, Evalue=1e-81,
Organism=Escherichia coli, GI1787919, Length=160, Percent_Identity=33.75, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFA_PASMU (Q9CNP0)

Other databases:

- EMBL:   AE004439
- RefSeq:   NP_245324.1
- GeneID:   1243734
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM0387
- NMPDR:   fig|272843.1.peg.387
- HOGENOM:   HBG624915
- OMA:   LRTIAFI
- ProtClustDB:   PRK05151
- BioCyc:   PMUL272843:PM0387-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_00459
- InterPro:   IPR003667
- InterPro:   IPR011293
- PIRSF:   PIRSF006102
- TIGRFAMs:   TIGR01943

Pfam domain/function: PF02508 Rnf-Nqr

EC number: NA

Molecular weight: Translated: 20612; Mature: 20481

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xbf1fff8)-; HASH(0xce97110)-; HASH(0xc851450)-; HASH(0xcad77fc)-; HASH(0xbb2a11c)-; HASH(0xbd1918c)-;

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEYILLIISTALINNFVLVKFLGLCPFMGVSKKIETAIGMSLATMFVLTVASISAYLID
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TYILTPLSATFLRTLVFILVIAVVVQFTEMVINKTSPTLYRLLGIFLPLITTNCAVLGVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LLNINQAHTLTQSVIYGFGASLGFGLVLVLFAALRERLAAADVPHVFKGASIALITAGLM
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHH
SLAFMGFTGLVR
HHHHHHHHHCCH
>Mature Secondary Structure 
TEYILLIISTALINNFVLVKFLGLCPFMGVSKKIETAIGMSLATMFVLTVASISAYLID
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TYILTPLSATFLRTLVFILVIAVVVQFTEMVINKTSPTLYRLLGIFLPLITTNCAVLGVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LLNINQAHTLTQSVIYGFGASLGFGLVLVLFAALRERLAAADVPHVFKGASIALITAGLM
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHH
SLAFMGFTGLVR
HHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11248100