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The map label for this gene is rnfC

Identifier: 15602250

GI number: 15602250

Start: 453098

End: 455605

Strand: Reverse

Name: rnfC

Synonym: PM0385

Alternate gene names: 15602250

Gene position: 455605-453098 (Counterclockwise)

Preceding gene: 15602251

Following gene: 15602249

Centisome position: 20.18

GC content: 46.25

Gene sequence:

>2508_bases
ATGGATGTTTTAACGCGTTTTAATTCAGGTAAATTGTGGGATTTTAAAGGTGGTGTCCATCCACCTGAACGGAAATCGCA
GTCAAACCAAAAACCGATTCGTCACGCAAAATTAGTTGAGCATTTTTATATTCCCGTTGTGCAACATGCTGGTGAGGCTG
GAAATATTTTAGTTAAAGTCGGCGATTATGTATTCAAAGGTCAACCGTTAACACAAGGCGATGGCTTACGTGTATTACCT
GTCCATGCCTCTACGTCGGGTTTTATTCGAGCCATTGCACCTTATGCTAGTGCGCACCCTTCCGGCTTGGCGACACTTTG
TTTGCATCTTGAAGCGGACGGTAAAGATCAATGGCGTGAACAACAACCCCTTGACGATTTCCTCACTCAAACGCCTGAAA
AGCTGATTGAAAAACTCTATCAAGCGGGTGTCGCTGGGTTAGGTGGTGCTGTTTTCCCAACCGCAGCTAAACTGCATTCT
GCTGAAAAACAAGTTAAATTATTAATTATTAATGGGGCTGAATGTGAACCTTATATTACCTGTGATGATCGTTTAATGCG
CGACTACGCGGATGAAATCATCGAAGGTACTCGCATTTTACGCTATATTTTACGCCCTGAAAAAGTCGTGATCGCGGTCG
AGGACAATAAACCAGAAGCTGTTGCGGCTTTACGTCAGGTTTTACAAGGCGCGAATGACATCGAGATCCGTGTCATTCCT
ACTAAATATCCTTCTGGTGCCGCTAAGCAATTAATTCAAATTCTCACTGGTATGGAAGTCCCCAGCGGTCAACGCTCTTC
CAGTATTGGTGTATTGATGCAAAATGTTGCTACGGCCTTTGCTGTTAAACGAGCAATTATGGATGATGAGCCACTGATTG
AACGTGTTGTCACATTAACGGGAGACAAAGTACGTCATAAAGGCAATTATTGGGTACGCTTAGGCACTCCAATCTATCAG
CTCTTACAGCAAGTAGACTATCATTATGACGATCGTTTTCCTGTGTTTATGGGAGGACCGATGATGGGCTTTATCTTGCC
AGATTTGCAGGCTCCCGTCACCAAAATGACCAACTGTTTGTTAGCCCCAGATCATTTTGAATATGCCCCACCTGCACCAG
AACAATCTTGTATCCGTTGTTCTGCTTGCTCTGATGCCTGCCCGGTAAGCTTGATGCCACAACAACTGTACTGGTTCGCA
CGTAGTGAAGATCATGAGAAATCCGAAGAATATGCCCTGAAAGACTGCATTGAATGTGGCTTATGCGCTTATGTCTGCCC
AAGTCATATTCCGTTAATCCAATACTTCCGCCAAGAAAAAGCCAAAATCTGGGAAATTCAACAAAAAGCTAAACAAGCGG
AAGAGGCCAAACAGCGTTTTGAAGCACGCCAAGCACGTTTAGCACGTGAAGAACAAGAACGTAAAGCACGAGCACAGAAA
GCCATGGAAGCGCGCCGTCAAGAAATGAAAACGGCGCAAGGAATAGACCCTGTTCAAGCAGCGCTTGAACGTTTAAAAGC
GAAAAAAACTGATAATGACAGCAGTGCGAAGGTGGAAATCAAAACAATTGTGACAGAAAAAGGCGACATCTTACCTGATA
ACAGCGATATTATGGCGCAACGTAAAGCACGTCGCTTAGCACGCCAACAGCAAACACAAAACACCGATGTTTCGCAGGTT
GAAACAAACGAAGAAAATAAATCAACTGACAGCAAATCGGCTGTTGCCGCCGCCATTGCCCGCGCTAAAGCTAAAAAAGC
AGCACAGCAAGGCAGTGCATTAGAAAAAGACGAAATTTCATCAAGCGATACGCTTAGCGTAGGAAATGACACAGAGCCGG
TAGCAGAAGATCCACGCAAAGCGGCGATTGCCGCCGCCATTGCGCGCGCCAAAGCCAAGAAAGCGGCACAGCAAGGCAGT
GCGGTAGAAAAAGACGAAATTTCATCAAGTAATACGCTTAGCGTAGGAAATGACACAGAGCCGGTAGCGGATGACCCACG
CAAAGTGGCGATTGCCGCTGCCATTGCCCGTGCCAAAGCTAAAAAAGCGGCACAGCAAGGCAGTGCGGTAGAACAAGACG
AAATTTCATCAAGTGATACGCTTAGTATAGGAAATGAAGCAGAACCGGTAGCGGATGATCCGCGTAAAGCGGCGATTGCC
GCCGCCATTGCGCGCGCTAAAGCTAAAAAAGCAGCACAGCAAAGAAGTGCGGTAGAACAAGACGAAATTTCATCAAGCGA
TACGCTTAGCGTAGGAAATGAAACAGAATCAGTAGCAGAAGATCCACGCAAAGCGGCGATTGCCGCCGCCATTGCGCGCG
CTAAAGCTAAAAAAGCAGCACAGCAAAGAAGTGCGGTAGAACAAGACGAAATTTCATCAAGCGATACGCTTAGCGTAGGA
AATGAAACAGAATCAGTAGCAGAAGATCCACGCAAAGCGGCGATTGCCGCCGCCATTGCGCGCGCTAAAGCTAAGAAAGC
CGCTAAAGCCAATAATCATGACGCATAA

Upstream 100 bases:

>100_bases
ACAATTCATAACTGGAATTGGAAATTCGATCCTAAACTGGTTATTCCCATTGTTGATACCACAACAACACAGAAAAAATT
AATCAAAGGGGAATAAAAAA

Downstream 100 bases:

>100_bases
GGACGAGAAATTACATGTTTAAAATGGTCAGTTCCCCTCATACTCATTCCGGTAAACTCACAATGCGTATTATGTTGTGG
GTCATTTTAGCAATGTTACC

Product: electron transport complex protein RnfC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 835; Mature: 835

Protein sequence:

>835_residues
MDVLTRFNSGKLWDFKGGVHPPERKSQSNQKPIRHAKLVEHFYIPVVQHAGEAGNILVKVGDYVFKGQPLTQGDGLRVLP
VHASTSGFIRAIAPYASAHPSGLATLCLHLEADGKDQWREQQPLDDFLTQTPEKLIEKLYQAGVAGLGGAVFPTAAKLHS
AEKQVKLLIINGAECEPYITCDDRLMRDYADEIIEGTRILRYILRPEKVVIAVEDNKPEAVAALRQVLQGANDIEIRVIP
TKYPSGAAKQLIQILTGMEVPSGQRSSSIGVLMQNVATAFAVKRAIMDDEPLIERVVTLTGDKVRHKGNYWVRLGTPIYQ
LLQQVDYHYDDRFPVFMGGPMMGFILPDLQAPVTKMTNCLLAPDHFEYAPPAPEQSCIRCSACSDACPVSLMPQQLYWFA
RSEDHEKSEEYALKDCIECGLCAYVCPSHIPLIQYFRQEKAKIWEIQQKAKQAEEAKQRFEARQARLAREEQERKARAQK
AMEARRQEMKTAQGIDPVQAALERLKAKKTDNDSSAKVEIKTIVTEKGDILPDNSDIMAQRKARRLARQQQTQNTDVSQV
ETNEENKSTDSKSAVAAAIARAKAKKAAQQGSALEKDEISSSDTLSVGNDTEPVAEDPRKAAIAAAIARAKAKKAAQQGS
AVEKDEISSSNTLSVGNDTEPVADDPRKVAIAAAIARAKAKKAAQQGSAVEQDEISSSDTLSIGNEAEPVADDPRKAAIA
AAIARAKAKKAAQQRSAVEQDEISSSDTLSVGNETESVAEDPRKAAIAAAIARAKAKKAAQQRSAVEQDEISSSDTLSVG
NETESVAEDPRKAAIAAAIARAKAKKAAKANNHDA

Sequences:

>Translated_835_residues
MDVLTRFNSGKLWDFKGGVHPPERKSQSNQKPIRHAKLVEHFYIPVVQHAGEAGNILVKVGDYVFKGQPLTQGDGLRVLP
VHASTSGFIRAIAPYASAHPSGLATLCLHLEADGKDQWREQQPLDDFLTQTPEKLIEKLYQAGVAGLGGAVFPTAAKLHS
AEKQVKLLIINGAECEPYITCDDRLMRDYADEIIEGTRILRYILRPEKVVIAVEDNKPEAVAALRQVLQGANDIEIRVIP
TKYPSGAAKQLIQILTGMEVPSGQRSSSIGVLMQNVATAFAVKRAIMDDEPLIERVVTLTGDKVRHKGNYWVRLGTPIYQ
LLQQVDYHYDDRFPVFMGGPMMGFILPDLQAPVTKMTNCLLAPDHFEYAPPAPEQSCIRCSACSDACPVSLMPQQLYWFA
RSEDHEKSEEYALKDCIECGLCAYVCPSHIPLIQYFRQEKAKIWEIQQKAKQAEEAKQRFEARQARLAREEQERKARAQK
AMEARRQEMKTAQGIDPVQAALERLKAKKTDNDSSAKVEIKTIVTEKGDILPDNSDIMAQRKARRLARQQQTQNTDVSQV
ETNEENKSTDSKSAVAAAIARAKAKKAAQQGSALEKDEISSSDTLSVGNDTEPVAEDPRKAAIAAAIARAKAKKAAQQGS
AVEKDEISSSNTLSVGNDTEPVADDPRKVAIAAAIARAKAKKAAQQGSAVEQDEISSSDTLSIGNEAEPVADDPRKAAIA
AAIARAKAKKAAQQRSAVEQDEISSSDTLSVGNETESVAEDPRKAAIAAAIARAKAKKAAQQRSAVEQDEISSSDTLSVG
NETESVAEDPRKAAIAAAIARAKAKKAAKANNHDA
>Mature_835_residues
MDVLTRFNSGKLWDFKGGVHPPERKSQSNQKPIRHAKLVEHFYIPVVQHAGEAGNILVKVGDYVFKGQPLTQGDGLRVLP
VHASTSGFIRAIAPYASAHPSGLATLCLHLEADGKDQWREQQPLDDFLTQTPEKLIEKLYQAGVAGLGGAVFPTAAKLHS
AEKQVKLLIINGAECEPYITCDDRLMRDYADEIIEGTRILRYILRPEKVVIAVEDNKPEAVAALRQVLQGANDIEIRVIP
TKYPSGAAKQLIQILTGMEVPSGQRSSSIGVLMQNVATAFAVKRAIMDDEPLIERVVTLTGDKVRHKGNYWVRLGTPIYQ
LLQQVDYHYDDRFPVFMGGPMMGFILPDLQAPVTKMTNCLLAPDHFEYAPPAPEQSCIRCSACSDACPVSLMPQQLYWFA
RSEDHEKSEEYALKDCIECGLCAYVCPSHIPLIQYFRQEKAKIWEIQQKAKQAEEAKQRFEARQARLAREEQERKARAQK
AMEARRQEMKTAQGIDPVQAALERLKAKKTDNDSSAKVEIKTIVTEKGDILPDNSDIMAQRKARRLARQQQTQNTDVSQV
ETNEENKSTDSKSAVAAAIARAKAKKAAQQGSALEKDEISSSDTLSVGNDTEPVAEDPRKAAIAAAIARAKAKKAAQQGS
AVEKDEISSSNTLSVGNDTEPVADDPRKVAIAAAIARAKAKKAAQQGSAVEQDEISSSDTLSIGNEAEPVADDPRKAAIA
AAIARAKAKKAAQQRSAVEQDEISSSDTLSVGNETESVAEDPRKAAIAAAIARAKAKKAAQQRSAVEQDEISSSDTLSVG
NETESVAEDPRKAAIAAAIARAKAKKAAKANNHDA

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains

Homologues:

Organism=Escherichia coli, GI1787916, Length=559, Percent_Identity=53.1305903398927, Blast_Score=602, Evalue=1e-173,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFC_PASMU (Q9CNP2)

Other databases:

- EMBL:   AE004439
- RefSeq:   NP_245322.1
- ProteinModelPortal:   Q9CNP2
- PRIDE:   Q9CNP2
- GeneID:   1243732
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM0385
- NMPDR:   fig|272843.1.peg.385
- HOGENOM:   HBG537098
- OMA:   RSAVEQD
- ProtClustDB:   PRK05035
- BioCyc:   PMUL272843:PM0385-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_00461
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554
- Gene3D:   G3DSA:1.10.1060.10
- TIGRFAMs:   TIGR01945

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB; SSF46548 Helical_ferredxn

EC number: NA

Molecular weight: Translated: 90853; Mature: 90853

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS00198 4FE4S_FER_1; PS51379 4FE4S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVLTRFNSGKLWDFKGGVHPPERKSQSNQKPIRHAKLVEHFYIPVVQHAGEAGNILVKV
CCCCCCCCCCCEEECCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
GDYVFKGQPLTQGDGLRVLPVHASTSGFIRAIAPYASAHPSGLATLCLHLEADGKDQWRE
CCEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHH
QQPLDDFLTQTPEKLIEKLYQAGVAGLGGAVFPTAAKLHSAEKQVKLLIINGAECEPYIT
CCCHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCEEC
CDDRLMRDYADEIIEGTRILRYILRPEKVVIAVEDNKPEAVAALRQVLQGANDIEIRVIP
CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEC
TKYPSGAAKQLIQILTGMEVPSGQRSSSIGVLMQNVATAFAVKRAIMDDEPLIERVVTLT
CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
GDKVRHKGNYWVRLGTPIYQLLQQVDYHYDDRFPVFMGGPMMGFILPDLQAPVTKMTNCL
CCHHEECCCEEEEECCHHHHHHHHHCCCCCCCCCEEECCCHHHHHCCCHHCHHHHHHHHE
LAPDHFEYAPPAPEQSCIRCSACSDACPVSLMPQQLYWFARSEDHEKSEEYALKDCIECG
ECCCCCCCCCCCCHHHHHEHHCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHC
LCAYVCPSHIPLIQYFRQEKAKIWEIQQKAKQAEEAKQRFEARQARLAREEQERKARAQK
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMEARRQEMKTAQGIDPVQAALERLKAKKTDNDSSAKVEIKTIVTEKGDILPDNSDIMAQ
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHH
RKARRLARQQQTQNTDVSQVETNEENKSTDSKSAVAAAIARAKAKKAAQQGSALEKDEIS
HHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCC
SSDTLSVGNDTEPVAEDPRKAAIAAAIARAKAKKAAQQGSAVEKDEISSSNTLSVGNDTE
CCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCEECCCCCC
PVADDPRKVAIAAAIARAKAKKAAQQGSAVEQDEISSSDTLSIGNEAEPVADDPRKAAIA
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCEECCCCCCCCCCCHHHHHHH
AAIARAKAKKAAQQRSAVEQDEISSSDTLSVGNETESVAEDPRKAAIAAAIARAKAKKAA
HHHHHHHHHHHHHHHHCCCHHHCCCCCCEECCCCHHHHHHCHHHHHHHHHHHHHHHHHHH
QQRSAVEQDEISSSDTLSVGNETESVAEDPRKAAIAAAIARAKAKKAAKANNHDA
HHHHCCCHHHCCCCCCEECCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDVLTRFNSGKLWDFKGGVHPPERKSQSNQKPIRHAKLVEHFYIPVVQHAGEAGNILVKV
CCCCCCCCCCCEEECCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
GDYVFKGQPLTQGDGLRVLPVHASTSGFIRAIAPYASAHPSGLATLCLHLEADGKDQWRE
CCEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHH
QQPLDDFLTQTPEKLIEKLYQAGVAGLGGAVFPTAAKLHSAEKQVKLLIINGAECEPYIT
CCCHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCEEC
CDDRLMRDYADEIIEGTRILRYILRPEKVVIAVEDNKPEAVAALRQVLQGANDIEIRVIP
CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEC
TKYPSGAAKQLIQILTGMEVPSGQRSSSIGVLMQNVATAFAVKRAIMDDEPLIERVVTLT
CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
GDKVRHKGNYWVRLGTPIYQLLQQVDYHYDDRFPVFMGGPMMGFILPDLQAPVTKMTNCL
CCHHEECCCEEEEECCHHHHHHHHHCCCCCCCCCEEECCCHHHHHCCCHHCHHHHHHHHE
LAPDHFEYAPPAPEQSCIRCSACSDACPVSLMPQQLYWFARSEDHEKSEEYALKDCIECG
ECCCCCCCCCCCCHHHHHEHHCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHC
LCAYVCPSHIPLIQYFRQEKAKIWEIQQKAKQAEEAKQRFEARQARLAREEQERKARAQK
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMEARRQEMKTAQGIDPVQAALERLKAKKTDNDSSAKVEIKTIVTEKGDILPDNSDIMAQ
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHH
RKARRLARQQQTQNTDVSQVETNEENKSTDSKSAVAAAIARAKAKKAAQQGSALEKDEIS
HHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCC
SSDTLSVGNDTEPVAEDPRKAAIAAAIARAKAKKAAQQGSAVEKDEISSSNTLSVGNDTE
CCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCEECCCCCC
PVADDPRKVAIAAAIARAKAKKAAQQGSAVEQDEISSSDTLSIGNEAEPVADDPRKAAIA
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCEECCCCCCCCCCCHHHHHHH
AAIARAKAKKAAQQRSAVEQDEISSSDTLSVGNETESVAEDPRKAAIAAAIARAKAKKAA
HHHHHHHHHHHHHHHHCCCHHHCCCCCCEECCCCHHHHHHCHHHHHHHHHHHHHHHHHHH
QQRSAVEQDEISSSDTLSVGNETESVAEDPRKAAIAAAIARAKAKKAAKANNHDA
HHHHCCCHHHCCCCCCEECCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11248100