| Definition | Pasteurella multocida subsp. multocida str. Pm70, complete genome. |
|---|---|
| Accession | NC_002663 |
| Length | 2,257,487 |
Click here to switch to the map view.
The map label for this gene is dppD [H]
Identifier: 15602104
GI number: 15602104
Start: 269612
End: 270610
Strand: Direct
Name: dppD [H]
Synonym: PM0239
Alternate gene names: 15602104
Gene position: 269612-270610 (Clockwise)
Preceding gene: 15602103
Following gene: 15602105
Centisome position: 11.94
GC content: 44.14
Gene sequence:
>999_bases ATGGCGTTATTAAATGTAGAAAATCTTTCGGTGCATTTTGGTGATGAAAATACCCCTTTTAAAGCGGTGGATCGCGTCAG TTACACGGTCAATGAAGGTGAAGTATTAGGTATTGTTGGCGAATCAGGTTCAGGAAAATCGGTGAGCTCACTCGCGATTA TGGGTCTAATTGATTATCCGGGGCGTGTACAAGCGGAACAATTGCTGTTTAATCAAAGTGATTTACTTGCCTTGACTGAA AAACAAAAGCAGAAAATTGTGGGAGCCGATGTGTCCATGATTTTCCAAGATGCGATGACCAGTTTAAACCCAAGTTATAC GGTGGGTTATCAAATTATGGAAGCACTGAAAGTTCATCAAGGTGGGGCTAAAGCATGGCGTAAAGAACGTGCTATCGAAT TATTAACCTTAGTGGGCATTCCTGATCCGCGTTCGCGTTTAGATGTGTATCCGCATCAATTATCGGGGGGCATGAGTCAA CGTGTGATGATTGCGATGGCGATTGCCTGTAATCCGAAATTATTAATTGCGGATGAACCGACAACTGCGTTAGACGTGAC GATTCAAGCACAGATTATTGATTTATTGCTGGAATTACAGCGTAAAGAAAATATGGCGTTAATCCTGATCACTCATGATC TTGCCTTAGTCGCGGAAGCAGCCCACCGCATTATTGTGATGTATGCAGGGCAAGTGGTTGAAGAAGGACGAGCGGAGGAA ATTTTTAAATGTCCACGCCATCCATATACTCAAGCGCTATTACGTGCGTTACCGGAATTTGCAGAAGGAAAATCGCGTTT ACAATCTTTACCGGGGGTTGTGCCGGGGAAATATGATCGCCCAACAGGCTGTTTATTAAATCCACGTTGCCCATACGCCA CAGATCGTTGTCGTGAGCAAGAACCAGAAACCCGTTTGGTGAATGGACATCGCGTCAAATGTCATACGCCGTTGAATGCG CAAGGTATGCCAAGTTGTACAGAATTTGCAGTGTCATAA
Upstream 100 bases:
>100_bases CCCGGTTTAGCCATTCTTTCTCTTGTCTTGGCGTTTAACTTGATGGGTGATGGTTTACGTGATGCACTTGATCCAAAATT AAAACAATAAGGTGGGCAGC
Downstream 100 bases:
>100_bases TAAGAAAGAGAACAATATGCAAGAACTTGAGAGACAAGCATCTTTGTTGGATGCAGTAAATTTGAAAAAATACTATCCCG TTAAAAAAGGGATATTGAGT
Product: dipeptide transporter ATP-binding subunit
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 332; Mature: 331
Protein sequence:
>332_residues MALLNVENLSVHFGDENTPFKAVDRVSYTVNEGEVLGIVGESGSGKSVSSLAIMGLIDYPGRVQAEQLLFNQSDLLALTE KQKQKIVGADVSMIFQDAMTSLNPSYTVGYQIMEALKVHQGGAKAWRKERAIELLTLVGIPDPRSRLDVYPHQLSGGMSQ RVMIAMAIACNPKLLIADEPTTALDVTIQAQIIDLLLELQRKENMALILITHDLALVAEAAHRIIVMYAGQVVEEGRAEE IFKCPRHPYTQALLRALPEFAEGKSRLQSLPGVVPGKYDRPTGCLLNPRCPYATDRCREQEPETRLVNGHRVKCHTPLNA QGMPSCTEFAVS
Sequences:
>Translated_332_residues MALLNVENLSVHFGDENTPFKAVDRVSYTVNEGEVLGIVGESGSGKSVSSLAIMGLIDYPGRVQAEQLLFNQSDLLALTE KQKQKIVGADVSMIFQDAMTSLNPSYTVGYQIMEALKVHQGGAKAWRKERAIELLTLVGIPDPRSRLDVYPHQLSGGMSQ RVMIAMAIACNPKLLIADEPTTALDVTIQAQIIDLLLELQRKENMALILITHDLALVAEAAHRIIVMYAGQVVEEGRAEE IFKCPRHPYTQALLRALPEFAEGKSRLQSLPGVVPGKYDRPTGCLLNPRCPYATDRCREQEPETRLVNGHRVKCHTPLNA QGMPSCTEFAVS >Mature_331_residues ALLNVENLSVHFGDENTPFKAVDRVSYTVNEGEVLGIVGESGSGKSVSSLAIMGLIDYPGRVQAEQLLFNQSDLLALTEK QKQKIVGADVSMIFQDAMTSLNPSYTVGYQIMEALKVHQGGAKAWRKERAIELLTLVGIPDPRSRLDVYPHQLSGGMSQR VMIAMAIACNPKLLIADEPTTALDVTIQAQIIDLLLELQRKENMALILITHDLALVAEAAHRIIVMYAGQVVEEGRAEEI FKCPRHPYTQALLRALPEFAEGKSRLQSLPGVVPGKYDRPTGCLLNPRCPYATDRCREQEPETRLVNGHRVKCHTPLNAQ GMPSCTEFAVS
Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI11967969, Length=232, Percent_Identity=26.7241379310345, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI9665248, Length=242, Percent_Identity=27.6859504132231, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1789963, Length=326, Percent_Identity=77.9141104294479, Blast_Score=528, Evalue=1e-151, Organism=Escherichia coli, GI48994883, Length=318, Percent_Identity=47.4842767295598, Blast_Score=291, Evalue=3e-80, Organism=Escherichia coli, GI1787548, Length=329, Percent_Identity=44.6808510638298, Blast_Score=283, Evalue=1e-77, Organism=Escherichia coli, GI145693107, Length=268, Percent_Identity=49.6268656716418, Blast_Score=257, Evalue=8e-70, Organism=Escherichia coli, GI1787759, Length=318, Percent_Identity=41.1949685534591, Blast_Score=241, Evalue=5e-65, Organism=Escherichia coli, GI1788506, Length=258, Percent_Identity=46.1240310077519, Blast_Score=219, Evalue=2e-58, Organism=Escherichia coli, GI1787500, Length=326, Percent_Identity=38.9570552147239, Blast_Score=214, Evalue=6e-57, Organism=Escherichia coli, GI1789962, Length=319, Percent_Identity=35.423197492163, Blast_Score=201, Evalue=6e-53, Organism=Escherichia coli, GI1787758, Length=333, Percent_Identity=33.6336336336336, Blast_Score=179, Evalue=2e-46, Organism=Escherichia coli, GI48994997, Length=255, Percent_Identity=35.2941176470588, Blast_Score=147, Evalue=1e-36, Organism=Escherichia coli, GI1789890, Length=234, Percent_Identity=36.3247863247863, Blast_Score=141, Evalue=5e-35, Organism=Escherichia coli, GI1787547, Length=259, Percent_Identity=33.2046332046332, Blast_Score=136, Evalue=2e-33, Organism=Escherichia coli, GI1789891, Length=239, Percent_Identity=37.2384937238494, Blast_Score=134, Evalue=6e-33, Organism=Escherichia coli, GI1786398, Length=274, Percent_Identity=31.7518248175182, Blast_Score=123, Evalue=2e-29, Organism=Escherichia coli, GI1789032, Length=237, Percent_Identity=33.3333333333333, Blast_Score=114, Evalue=1e-26, Organism=Escherichia coli, GI1788225, Length=256, Percent_Identity=31.640625, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI1787029, Length=254, Percent_Identity=29.5275590551181, Blast_Score=109, Evalue=3e-25, Organism=Escherichia coli, GI87081834, Length=234, Percent_Identity=34.6153846153846, Blast_Score=108, Evalue=6e-25, Organism=Escherichia coli, GI1787089, Length=237, Percent_Identity=33.7552742616034, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI1789672, Length=254, Percent_Identity=29.1338582677165, Blast_Score=101, Evalue=8e-23, Organism=Escherichia coli, GI87081791, Length=258, Percent_Identity=31.0077519379845, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1788644, Length=259, Percent_Identity=31.6602316602317, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1787370, Length=240, Percent_Identity=29.1666666666667, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1786703, Length=233, Percent_Identity=34.3347639484979, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1790162, Length=253, Percent_Identity=26.4822134387352, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI87081709, Length=252, Percent_Identity=25.7936507936508, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1786872, Length=259, Percent_Identity=30.1158301158301, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1788450, Length=253, Percent_Identity=26.8774703557312, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1787712, Length=251, Percent_Identity=29.4820717131474, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1786563, Length=228, Percent_Identity=31.140350877193, Blast_Score=86, Evalue=5e-18, Organism=Escherichia coli, GI1787105, Length=224, Percent_Identity=33.4821428571429, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1788761, Length=268, Percent_Identity=27.2388059701493, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI48994943, Length=242, Percent_Identity=28.099173553719, Blast_Score=78, Evalue=8e-16, Organism=Escherichia coli, GI87082267, Length=231, Percent_Identity=27.2727272727273, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1786345, Length=241, Percent_Identity=28.6307053941909, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1789593, Length=243, Percent_Identity=26.7489711934156, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1789873, Length=212, Percent_Identity=28.7735849056604, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1790467, Length=260, Percent_Identity=26.9230769230769, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1789991, Length=235, Percent_Identity=26.8085106382979, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1786803, Length=241, Percent_Identity=25.7261410788382, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI1788165, Length=226, Percent_Identity=26.1061946902655, Blast_Score=72, Evalue=7e-14, Organism=Escherichia coli, GI1787164, Length=230, Percent_Identity=29.5652173913043, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1790544, Length=259, Percent_Identity=25.4826254826255, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1786253, Length=224, Percent_Identity=27.2321428571429, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1790739, Length=243, Percent_Identity=25.1028806584362, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI48995001, Length=237, Percent_Identity=29.535864978903, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1787792, Length=233, Percent_Identity=27.0386266094421, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1787112, Length=228, Percent_Identity=29.8245614035088, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI87082268, Length=238, Percent_Identity=26.4705882352941, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1788053, Length=217, Percent_Identity=27.6497695852535, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1786319, Length=222, Percent_Identity=28.3783783783784, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI1790534, Length=232, Percent_Identity=29.3103448275862, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1790525, Length=232, Percent_Identity=27.5862068965517, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1789586, Length=226, Percent_Identity=26.5486725663717, Blast_Score=61, Evalue=9e-11, Organism=Caenorhabditis elegans, GI193209708, Length=218, Percent_Identity=30.7339449541284, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI115534520, Length=262, Percent_Identity=27.8625954198473, Blast_Score=71, Evalue=9e-13, Organism=Caenorhabditis elegans, GI25146777, Length=254, Percent_Identity=28.740157480315, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193211015, Length=219, Percent_Identity=27.3972602739726, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI71996809, Length=219, Percent_Identity=27.3972602739726, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI193211017, Length=219, Percent_Identity=27.3972602739726, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI193208177, Length=245, Percent_Identity=27.3469387755102, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI212646699, Length=219, Percent_Identity=26.9406392694064, Blast_Score=66, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=105, Percent_Identity=35.2380952380952, Blast_Score=67, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6319856, Length=249, Percent_Identity=24.4979919678715, Blast_Score=63, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6322640, Length=252, Percent_Identity=27.7777777777778, Blast_Score=63, Evalue=7e-11, Organism=Drosophila melanogaster, GI28574150, Length=218, Percent_Identity=25.6880733944954, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI116007328, Length=218, Percent_Identity=25.6880733944954, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI24582014, Length=236, Percent_Identity=27.5423728813559, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24582012, Length=236, Percent_Identity=27.5423728813559, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI21357907, Length=239, Percent_Identity=30.1255230125523, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI28574744, Length=230, Percent_Identity=28.2608695652174, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI19920532, Length=215, Percent_Identity=27.4418604651163, Blast_Score=65, Evalue=7e-11, Organism=Drosophila melanogaster, GI24580930, Length=215, Percent_Identity=27.4418604651163, Blast_Score=65, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 36502; Mature: 36371
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALLNVENLSVHFGDENTPFKAVDRVSYTVNEGEVLGIVGESGSGKSVSSLAIMGLIDYP CEEEEEECEEEEECCCCCCHHHHHHEEEEECCCEEEEEEECCCCCCCHHHEEEEEEECCC GRVQAEQLLFNQSDLLALTEKQKQKIVGADVSMIFQDAMTSLNPSYTVGYQIMEALKVHQ CCCCHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC GGAKAWRKERAIELLTLVGIPDPRSRLDVYPHQLSGGMSQRVMIAMAIACNPKLLIADEP CCHHHHHHHHHHEEEEEECCCCCHHHHCCCCHHHCCCCHHHEEEEEEEECCCEEEEECCC TTALDVTIQAQIIDLLLELQRKENMALILITHDLALVAEAAHRIIVMYAGQVVEEGRAEE CCEEEEEEHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHEEEEECCHHHHCCCHHH IFKCPRHPYTQALLRALPEFAEGKSRLQSLPGVVPGKYDRPTGCLLNPRCPYATDRCREQ HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCHHHHHCC EPETRLVNGHRVKCHTPLNAQGMPSCTEFAVS CCCCEECCCCEEEEECCCCCCCCCCHHHHCCC >Mature Secondary Structure ALLNVENLSVHFGDENTPFKAVDRVSYTVNEGEVLGIVGESGSGKSVSSLAIMGLIDYP EEEEEECEEEEECCCCCCHHHHHHEEEEECCCEEEEEEECCCCCCCHHHEEEEEEECCC GRVQAEQLLFNQSDLLALTEKQKQKIVGADVSMIFQDAMTSLNPSYTVGYQIMEALKVHQ CCCCHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC GGAKAWRKERAIELLTLVGIPDPRSRLDVYPHQLSGGMSQRVMIAMAIACNPKLLIADEP CCHHHHHHHHHHEEEEEECCCCCHHHHCCCCHHHCCCCHHHEEEEEEEECCCEEEEECCC TTALDVTIQAQIIDLLLELQRKENMALILITHDLALVAEAAHRIIVMYAGQVVEEGRAEE CCEEEEEEHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHEEEEECCHHHHCCCHHH IFKCPRHPYTQALLRALPEFAEGKSRLQSLPGVVPGKYDRPTGCLLNPRCPYATDRCREQ HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCHHHHHCC EPETRLVNGHRVKCHTPLNAQGMPSCTEFAVS CCCCEECCCCEEEEECCCCCCCCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800; 8550458 [H]