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The map label for this gene is raiA [H]

Identifier: 15601957

GI number: 15601957

Start: 117906

End: 118223

Strand: Direct

Name: raiA [H]

Synonym: PM0092

Alternate gene names: 15601957

Gene position: 117906-118223 (Clockwise)

Preceding gene: 15601956

Following gene: 15601961

Centisome position: 5.22

GC content: 38.05

Gene sequence:

>318_bases
ATGACTCTAAACATCACAAGCAAACAAATGGAAATCACTCCTGCAATCCGTGCTCACGTCGAAGATAGACTTGCTAAATT
AGGTAAATGGCAAACTCAATTAATTAATCCCCACTTTATTTTAAACAAAATACCAAAAGGTTTTTCGGTTGAGGCATCGA
TTGGTACCCCGCTTGGCGATTTGTTTGCAAAAGCAGAGTCAGAAGATATGTATAAAGCCGTCAACGAAGTAGAAGAAAAA
TTAGAGCGTCAGTTAAATAAATTACAACATAAAGGCGAAGCGCGTCGTGCCGATGAACGCTTAAAAGATTCTTTCTAA

Upstream 100 bases:

>100_bases
AAAAGACTTGAAAACTGCGTGTAAGGCGACTATGTTGTAGATAAGGATTATTCAACACAAGGGACAAAAAAGTCCCCTTT
TCAACAGAGAGGTAAATGCT

Downstream 100 bases:

>100_bases
TCCTGTTATCCAACGTTAAAACTGCATCCTTGTGATGCAGTTTTTTTATGCTTGATGTTAGCCCCTTGGATGGTAGCGTT
CATGTAAATGTTTTAAACGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 105; Mature: 104

Protein sequence:

>105_residues
MTLNITSKQMEITPAIRAHVEDRLAKLGKWQTQLINPHFILNKIPKGFSVEASIGTPLGDLFAKAESEDMYKAVNEVEEK
LERQLNKLQHKGEARRADERLKDSF

Sequences:

>Translated_105_residues
MTLNITSKQMEITPAIRAHVEDRLAKLGKWQTQLINPHFILNKIPKGFSVEASIGTPLGDLFAKAESEDMYKAVNEVEEK
LERQLNKLQHKGEARRADERLKDSF
>Mature_104_residues
TLNITSKQMEITPAIRAHVEDRLAKLGKWQTQLINPHFILNKIPKGFSVEASIGTPLGDLFAKAESEDMYKAVNEVEEKL
ERQLNKLQHKGEARRADERLKDSF

Specific function: During environmental stress such as cold shock or excessive cell density at stationary phase, stabilizes the 70S ribosome against dissociation, inhibits translation initiation and increase translation accuracy. When normal growth conditions are restored,

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

Organism=Escherichia coli, GI1788949, Length=104, Percent_Identity=70.1923076923077, Blast_Score=151, Evalue=8e-39,

Paralogues:

None

Copy number: 600 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 12003; Mature: 11872

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLNITSKQMEITPAIRAHVEDRLAKLGKWQTQLINPHFILNKIPKGFSVEASIGTPLGD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEECCCCCCHHH
LFAKAESEDMYKAVNEVEEKLERQLNKLQHKGEARRADERLKDSF
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
>Mature Secondary Structure 
TLNITSKQMEITPAIRAHVEDRLAKLGKWQTQLINPHFILNKIPKGFSVEASIGTPLGD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEECCCCCCHHH
LFAKAESEDMYKAVNEVEEKLERQLNKLQHKGEARRADERLKDSF
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]