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The map label for this gene is nrfC [H]

Identifier: 15601890

GI number: 15601890

Start: 21833

End: 22513

Strand: Direct

Name: nrfC [H]

Synonym: PM0025

Alternate gene names: 15601890

Gene position: 21833-22513 (Clockwise)

Preceding gene: 15601889

Following gene: 15601891

Centisome position: 0.97

GC content: 45.23

Gene sequence:

>681_bases
ATGACAGCTTGCTCACGCCGAAACTTTGTTTCCGGCATGGGAGCGTTAATCCTCATGACGGGAACATCAATAAAATCAGT
GGGACAGAACGCAAGCGAGGCGAAAAAAACAATTCGTTATGCGATGTTACACGATGAAACCGCTTGTATCGGTTGTACTG
CTTGTATGGATGCATGTCGTGAAACCAACCAGGTCCCAGAAGGGGTTTCTCGTTTGGAGATTATCCGTAGTGAGCCTTAT
GGTGAGTTTCCAAACGCAGAATATGAATTTTTCCGCCATTCTTGTCAGCATTGTCACAATGCACCTTGTGTGCATGTTTG
TCCAACAGGGGCGTCTTTTGTTGACAAGGAAACAGGTATTGTCGATGTGCACAAAGATCTTTGTGTCGGTTGCCAATATT
GTATTGCTGTCTGTCCATATCGTGTTCGATTTATTCACCCCGTGTATAAATCAGCCGATAAATGTAACTTCTGTCGCGAT
ACCAATTTAGCTAACGGCAAATTACCGGCTTGTGTGGAATCTTGCCCAACCAATGCGTTGACCTTTGGGGATCTGAATGA
TCCTGACAGTGCCATTTCACAAAAAGTCAAATCGCAGCAAGTGTATCGGACGAAGGTGGAATTAGGCACCGATCCACAGC
TGTATCATGTACCAGCTAAAAGAGGGGAGCTAAGACGATGA

Upstream 100 bases:

>100_bases
ACCAAGTGAAACTTTGCGTGGATTGTCACGGTGAACAACAAAAACGTAAGGCAAATTTACAACCACCGCATATTTATGCT
CCGCAACAAAAGGATAAACA

Downstream 100 bases:

>100_bases
ACAGTCCATTTCATTTCCCGTCTTTAGTATGGGATCATACCATCGCCGTTTATTTGTTCTTATTGGGGATCTCTGCCGGT
GCAACCATGTTAGCCGTTTT

Product: NrfC

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MTACSRRNFVSGMGALILMTGTSIKSVGQNASEAKKTIRYAMLHDETACIGCTACMDACRETNQVPEGVSRLEIIRSEPY
GEFPNAEYEFFRHSCQHCHNAPCVHVCPTGASFVDKETGIVDVHKDLCVGCQYCIAVCPYRVRFIHPVYKSADKCNFCRD
TNLANGKLPACVESCPTNALTFGDLNDPDSAISQKVKSQQVYRTKVELGTDPQLYHVPAKRGELRR

Sequences:

>Translated_226_residues
MTACSRRNFVSGMGALILMTGTSIKSVGQNASEAKKTIRYAMLHDETACIGCTACMDACRETNQVPEGVSRLEIIRSEPY
GEFPNAEYEFFRHSCQHCHNAPCVHVCPTGASFVDKETGIVDVHKDLCVGCQYCIAVCPYRVRFIHPVYKSADKCNFCRD
TNLANGKLPACVESCPTNALTFGDLNDPDSAISQKVKSQQVYRTKVELGTDPQLYHVPAKRGELRR
>Mature_225_residues
TACSRRNFVSGMGALILMTGTSIKSVGQNASEAKKTIRYAMLHDETACIGCTACMDACRETNQVPEGVSRLEIIRSEPYG
EFPNAEYEFFRHSCQHCHNAPCVHVCPTGASFVDKETGIVDVHKDLCVGCQYCIAVCPYRVRFIHPVYKSADKCNFCRDT
NLANGKLPACVESCPTNALTFGDLNDPDSAISQKVKSQQVYRTKVELGTDPQLYHVPAKRGELRR

Specific function: Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI2367345, Length=220, Percent_Identity=65.9090909090909, Blast_Score=311, Evalue=3e-86,
Organism=Escherichia coli, GI226510944, Length=211, Percent_Identity=46.4454976303318, Blast_Score=196, Evalue=9e-52,
Organism=Escherichia coli, GI1789370, Length=245, Percent_Identity=31.8367346938775, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1790326, Length=171, Percent_Identity=31.5789473684211, Blast_Score=97, Evalue=8e-22,
Organism=Escherichia coli, GI1787749, Length=171, Percent_Identity=30.4093567251462, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1787122, Length=158, Percent_Identity=34.8101265822785, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1787872, Length=158, Percent_Identity=34.1772151898734, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1787740, Length=145, Percent_Identity=29.6551724137931, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789067, Length=169, Percent_Identity=28.9940828402367, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI1787478, Length=141, Percent_Identity=29.0780141843972, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI2367245, Length=158, Percent_Identity=32.2784810126582, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1788811, Length=177, Percent_Identity=31.0734463276836, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082180, Length=169, Percent_Identity=31.9526627218935, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI87082179, Length=161, Percent_Identity=27.9503105590062, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789079, Length=197, Percent_Identity=27.4111675126904, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787963, Length=182, Percent_Identity=23.6263736263736, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR017567
- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24995; Mature: 24864

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
9.7 %Cys+Met (Translated Protein)
7.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
9.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTACSRRNFVSGMGALILMTGTSIKSVGQNASEAKKTIRYAMLHDETACIGCTACMDACR
CCCCCCCHHHHCCCEEEEEECCHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
ETNQVPEGVSRLEIIRSEPYGEFPNAEYEFFRHSCQHCHNAPCVHVCPTGASFVDKETGI
HHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHCCCCCE
VDVHKDLCVGCQYCIAVCPYRVRFIHPVYKSADKCNFCRDTNLANGKLPACVESCPTNAL
EECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCE
TFGDLNDPDSAISQKVKSQQVYRTKVELGTDPQLYHVPAKRGELRR
EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCC
>Mature Secondary Structure 
TACSRRNFVSGMGALILMTGTSIKSVGQNASEAKKTIRYAMLHDETACIGCTACMDACR
CCCCCCHHHHCCCEEEEEECCHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
ETNQVPEGVSRLEIIRSEPYGEFPNAEYEFFRHSCQHCHNAPCVHVCPTGASFVDKETGI
HHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHCCCCCE
VDVHKDLCVGCQYCIAVCPYRVRFIHPVYKSADKCNFCRDTNLANGKLPACVESCPTNAL
EECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCE
TFGDLNDPDSAISQKVKSQQVYRTKVELGTDPQLYHVPAKRGELRR
EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]