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The map label for this gene is ccmH_2 [H]

Identifier: 15601878

GI number: 15601878

Start: 11366

End: 12280

Strand: Direct

Name: ccmH_2 [H]

Synonym: PM0013

Alternate gene names: 15601878

Gene position: 11366-12280 (Clockwise)

Preceding gene: 15601877

Following gene: 15601879

Centisome position: 0.5

GC content: 39.34

Gene sequence:

>915_bases
ATGAGTTTTTGGTTAAGTGTGATGTTATTCACGTTATTTATCGCCTTCATTTGTTTTTATCCGTTACTTAAATCCAGTAC
GAACTCGTCTTTAACAAGACAGACCGTGAAACGTGATGAATTAAACAAGGCGTTATATTTTCAACGTTTAGCCGAGATTG
AGCGTGATGAAGCACAGGGCTTATTAGAAAATGCCACGCAAGTCAAAACGGAATTGCAACAAACGCTATTAGAAGATATT
CCAGAATCGGCACAACAACATGAGAATGAACAGAAAACCTATGGCAAAATCTGGTTTGTGTCGGGTTTGTTGGCATTAAG
TATTTTATCGCTGAGTGCTTATTTAAGTGTTGGCGCATGGCAAGCTGAAGCTATGTTGGAAAAAACCTACCAAAAATTAC
CGCACTTTCACGAACGCTTGAAAGAGGAACAACATCATCCTTTGAATGAGTCAGAATTACAGCAATTTTCTACCGCACTT
CGTTTGCATTTACAAAAGCAGCCAAGTGATGCGAAAAGTTGGTGGTTACTGGGGCAAATTGCGATGAATACGAATAAAGG
GCAATTAGCACTCGATAGCTATGCTAGAGCGCATCAACTTGAACCTGACAACATTGAATATAAATTATCTTATGCACGAA
TTCTGATGTTTTCAGAAGATACATCGGATAAAACTAAAGGGGACACGCTGTTAAAAGAAGTCATTCGGAAAGATCATAGT
AATCTTGAAGCATTAGGCTTATTGGCGTTTCGTTATTTTGAAACAGAAGATTATAAAATGGCGGCTGTCACTTGGTCGAT
GATGCTACGTCTTTTACCTGAAGATGATCCACGAGTGACATTAATTGAACGCAGTATTCATTCTGCTCTGGCATCGCAAG
AAGCACAAGAAGAGGCAAAGCGTAAGCCAGAGTGA

Upstream 100 bases:

>100_bases
GTCGCCATACTAAGCAAGTCGTGACCGCGCAGGCGAGTGAACCTCGTTTGAGTGATGAACAAAAACAGCGTTTACAACGT
TTATTACAAGAGAAGAAAGA

Downstream 100 bases:

>100_bases
GTAAGCGGTCACGAAAATGTCGCGTTATGTGCTGATAAAGTCGATAGTGAGTGCCTTCTTTGTTGAAACGGGAGAGGGCG
CTATTTATTTTACATTGATT

Product: CcmH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MSFWLSVMLFTLFIAFICFYPLLKSSTNSSLTRQTVKRDELNKALYFQRLAEIERDEAQGLLENATQVKTELQQTLLEDI
PESAQQHENEQKTYGKIWFVSGLLALSILSLSAYLSVGAWQAEAMLEKTYQKLPHFHERLKEEQHHPLNESELQQFSTAL
RLHLQKQPSDAKSWWLLGQIAMNTNKGQLALDSYARAHQLEPDNIEYKLSYARILMFSEDTSDKTKGDTLLKEVIRKDHS
NLEALGLLAFRYFETEDYKMAAVTWSMMLRLLPEDDPRVTLIERSIHSALASQEAQEEAKRKPE

Sequences:

>Translated_304_residues
MSFWLSVMLFTLFIAFICFYPLLKSSTNSSLTRQTVKRDELNKALYFQRLAEIERDEAQGLLENATQVKTELQQTLLEDI
PESAQQHENEQKTYGKIWFVSGLLALSILSLSAYLSVGAWQAEAMLEKTYQKLPHFHERLKEEQHHPLNESELQQFSTAL
RLHLQKQPSDAKSWWLLGQIAMNTNKGQLALDSYARAHQLEPDNIEYKLSYARILMFSEDTSDKTKGDTLLKEVIRKDHS
NLEALGLLAFRYFETEDYKMAAVTWSMMLRLLPEDDPRVTLIERSIHSALASQEAQEEAKRKPE
>Mature_303_residues
SFWLSVMLFTLFIAFICFYPLLKSSTNSSLTRQTVKRDELNKALYFQRLAEIERDEAQGLLENATQVKTELQQTLLEDIP
ESAQQHENEQKTYGKIWFVSGLLALSILSLSAYLSVGAWQAEAMLEKTYQKLPHFHERLKEEQHHPLNESELQQFSTALR
LHLQKQPSDAKSWWLLGQIAMNTNKGQLALDSYARAHQLEPDNIEYKLSYARILMFSEDTSDKTKGDTLLKEVIRKDHSN
LEALGLLAFRYFETEDYKMAAVTWSMMLRLLPEDDPRVTLIERSIHSALASQEAQEEAKRKPE

Specific function: May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=218, Percent_Identity=33.9449541284404, Blast_Score=147, Evalue=6e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616
- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 35188; Mature: 35057

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFWLSVMLFTLFIAFICFYPLLKSSTNSSLTRQTVKRDELNKALYFQRLAEIERDEAQG
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLENATQVKTELQQTLLEDIPESAQQHENEQKTYGKIWFVSGLLALSILSLSAYLSVGAW
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAEAMLEKTYQKLPHFHERLKEEQHHPLNESELQQFSTALRLHLQKQPSDAKSWWLLGQI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
AMNTNKGQLALDSYARAHQLEPDNIEYKLSYARILMFSEDTSDKTKGDTLLKEVIRKDHS
EECCCCCCCHHHHHHHHHCCCCCCCEEEEEEHEEEEEECCCCCCCHHHHHHHHHHHHCCC
NLEALGLLAFRYFETEDYKMAAVTWSMMLRLLPEDDPRVTLIERSIHSALASQEAQEEAK
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
RKPE
CCCC
>Mature Secondary Structure 
SFWLSVMLFTLFIAFICFYPLLKSSTNSSLTRQTVKRDELNKALYFQRLAEIERDEAQG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLENATQVKTELQQTLLEDIPESAQQHENEQKTYGKIWFVSGLLALSILSLSAYLSVGAW
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAEAMLEKTYQKLPHFHERLKEEQHHPLNESELQQFSTALRLHLQKQPSDAKSWWLLGQI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
AMNTNKGQLALDSYARAHQLEPDNIEYKLSYARILMFSEDTSDKTKGDTLLKEVIRKDHS
EECCCCCCCHHHHHHHHHCCCCCCCEEEEEEHEEEEEECCCCCCCHHHHHHHHHHHHCCC
NLEALGLLAFRYFETEDYKMAAVTWSMMLRLLPEDDPRVTLIERSIHSALASQEAQEEAK
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
RKPE
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]