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The map label for this gene is ccmF [H]

Identifier: 15601875

GI number: 15601875

Start: 8408

End: 10363

Strand: Direct

Name: ccmF [H]

Synonym: PM0010

Alternate gene names: 15601875

Gene position: 8408-10363 (Clockwise)

Preceding gene: 15601874

Following gene: 15601876

Centisome position: 0.37

GC content: 44.12

Gene sequence:

>1956_bases
ATGATCGCTGAATTAGGAAATTATGCTTTAGCGTTAAGTCTTGCCATCGCGATGCTAGTGGCAATTTTTGCCTTGTGGGG
CGCAGAAAAAAATCATATACAACTGATGTCGTTAGCGCGCCCCATGACTTATGGGCTCTTTATCAGTTTAACGGTGGCTT
TTGTTGCGTTGTTTTACTTGTTTGCGGTGAATGATTTTTCCGTGCAATACATCGTCAATAACTCAAACACGAATTTGCCT
TTACATTACCGTTTATCCGCGGTTTGGGGCTCTCACGAAGGGTCTTTATTATTGTGGATTTGGTTGCTGACGTTATGGGG
GGCGGCGGTGGCTTGGTTTAGCAAACAACTCCCTCAAGAAGCCGTTGCTCGTGTATTGGGGATCATGGGGATCATTAGTA
TTGGTTTCTTGATTTTTGTATTATTCACTTCAAATCCATTTGACCGCACGTTTCCTGATTTTCCGGTTGATGGGAAAGAA
CTCAATCCCTTATTACAAGATGTAGGGTTGATTTTTCATCCTCCGTTACTTTATATGGGGTATGTTGGTTTTTCGGTCGC
CTTTGCCTTTGCAATTGCCTCGTTAATGACCGGAAAACTGGATACCGCTTGGGCAAGATGGTCACGTCCTTGGACAATGG
CAGCTTGGGTTTTCTTAACCTTAGGGATCGTGTTAGGTTCTTGGTGGGCGTATTATGAACTCGGTTGGGGCGGTTGGTGG
TTCTGGGACCCGGTAGAAAATGCCTCACTTATGCCTTGGATTGCTGGCACCGCATTGTTGCATTCATTAGCAGTCACAGA
AAAACGTGGCTCTTTTAAAGCTTGGACAGTGTTATTAGCGATTTTGGCTTTCTCCCTTTGCTTGCTTGGCACCTTCTTGG
TGCGTTCGGGTATTTTGGTTTCCGTGCATGCGTTTGCCTCCGATCCTACTCGTGGACTGTATATTCTAGCGTATCTCGTT
GTGGTCATTGGTGGATCCTTAGTCCTGTATGCGTATAAAGGCAGCCAAATTCGCTCACGTGAAAATGCCGAACGCTATTC
GCGTGAAACTGCATTGTTACTCAATAATATTCTTTTAATGAGTGCACTTTCTGTTGTGTTGCTTGGTACGCTCTTACCAC
TGGTGCATAAACAATTGGGGTTGGGCACTATTTCAGTCGGCGCGCCGTTTTTTGATCAAATGTTTTTAATCATCATGGTG
CCTTTCTCACTTTTATTAGGTGTTGGACCGTTAATAAAATGGCGTCGTGATGAATTTTCAGCGATTCGTAAACCGGTTAT
CCTGAGCTTAATTGTTATGTTAGTCGCCGGTTTCGCCTTGCCTTATCTCTTACAGGATCAATTGACGGTGAGTGCAGTAT
TGGGCACGATGATGGCGGTATTTATCGTGTTGTTAAGTGTGTATGAGTTGCAACAACGCGCCACACATCGTTCAGCTTTT
TGGTCTGGATTAACGAAACTTTCTCGTTCTCATTGGGGCATGGTGTTGGCACACTTAGGTGTGGCAATGTCTGTGTGGGG
GATTGCTTTTAGTCAGAACTACAGTATTGAGCGTGATGTACGTATGAATGTGGGAGATAGCGTACAAATTGCGGATTATC
AATTTACTTTCCAAGGCATTACGGAGGCAAATGGACCGAATTATTTGGGGGGCAAAGCACAAGTCGATATTCGTCGTAAT
GGACAAGTAGAAGCCATCTTATTTGCCGAAAAACGTTTCTATACGGTGAGTAAAATGACCATGACTGAAGCTGCGATTGA
TTGGGGATTTACGCGTGATATTTACGTCGCATTGGGGGAAAACTTAGGACAAGATGCTTGGGCATTACGTTTATATTATA
AGCCGTTTATCCGCTGGATTTGGTTCGGTGGTGTCTTTATGGCATTAGGTGGATTACTCTGTATGTTTGATCGTCGTTAT
CGTTTTGGGAAGTTATTTACTAAGGGGCAGGCATGA

Upstream 100 bases:

>100_bases
AAGTACATAAACCTATGGGGGTCGCTGATTTGAAAGGGGAAAGCGAGCGAGATCGTCAAGAAAAAGCTTACCAGAAAACA
TCGATGCAAGAAGGTCAAAA

Downstream 100 bases:

>100_bases
ACAAAAAATTGTATTTTCCCTTAATTTTATTCTTAATTTTAGTTTTTGCGTTTGCTGTTCAGCTCCTGCGTAACGCGCAA
GGTGATGATCCTAAAGCATT

Product: CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 651; Mature: 651

Protein sequence:

>651_residues
MIAELGNYALALSLAIAMLVAIFALWGAEKNHIQLMSLARPMTYGLFISLTVAFVALFYLFAVNDFSVQYIVNNSNTNLP
LHYRLSAVWGSHEGSLLLWIWLLTLWGAAVAWFSKQLPQEAVARVLGIMGIISIGFLIFVLFTSNPFDRTFPDFPVDGKE
LNPLLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGKLDTAWARWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWW
FWDPVENASLMPWIAGTALLHSLAVTEKRGSFKAWTVLLAILAFSLCLLGTFLVRSGILVSVHAFASDPTRGLYILAYLV
VVIGGSLVLYAYKGSQIRSRENAERYSRETALLLNNILLMSALSVVLLGTLLPLVHKQLGLGTISVGAPFFDQMFLIIMV
PFSLLLGVGPLIKWRRDEFSAIRKPVILSLIVMLVAGFALPYLLQDQLTVSAVLGTMMAVFIVLLSVYELQQRATHRSAF
WSGLTKLSRSHWGMVLAHLGVAMSVWGIAFSQNYSIERDVRMNVGDSVQIADYQFTFQGITEANGPNYLGGKAQVDIRRN
GQVEAILFAEKRFYTVSKMTMTEAAIDWGFTRDIYVALGENLGQDAWALRLYYKPFIRWIWFGGVFMALGGLLCMFDRRY
RFGKLFTKGQA

Sequences:

>Translated_651_residues
MIAELGNYALALSLAIAMLVAIFALWGAEKNHIQLMSLARPMTYGLFISLTVAFVALFYLFAVNDFSVQYIVNNSNTNLP
LHYRLSAVWGSHEGSLLLWIWLLTLWGAAVAWFSKQLPQEAVARVLGIMGIISIGFLIFVLFTSNPFDRTFPDFPVDGKE
LNPLLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGKLDTAWARWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWW
FWDPVENASLMPWIAGTALLHSLAVTEKRGSFKAWTVLLAILAFSLCLLGTFLVRSGILVSVHAFASDPTRGLYILAYLV
VVIGGSLVLYAYKGSQIRSRENAERYSRETALLLNNILLMSALSVVLLGTLLPLVHKQLGLGTISVGAPFFDQMFLIIMV
PFSLLLGVGPLIKWRRDEFSAIRKPVILSLIVMLVAGFALPYLLQDQLTVSAVLGTMMAVFIVLLSVYELQQRATHRSAF
WSGLTKLSRSHWGMVLAHLGVAMSVWGIAFSQNYSIERDVRMNVGDSVQIADYQFTFQGITEANGPNYLGGKAQVDIRRN
GQVEAILFAEKRFYTVSKMTMTEAAIDWGFTRDIYVALGENLGQDAWALRLYYKPFIRWIWFGGVFMALGGLLCMFDRRY
RFGKLFTKGQA
>Mature_651_residues
MIAELGNYALALSLAIAMLVAIFALWGAEKNHIQLMSLARPMTYGLFISLTVAFVALFYLFAVNDFSVQYIVNNSNTNLP
LHYRLSAVWGSHEGSLLLWIWLLTLWGAAVAWFSKQLPQEAVARVLGIMGIISIGFLIFVLFTSNPFDRTFPDFPVDGKE
LNPLLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGKLDTAWARWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWW
FWDPVENASLMPWIAGTALLHSLAVTEKRGSFKAWTVLLAILAFSLCLLGTFLVRSGILVSVHAFASDPTRGLYILAYLV
VVIGGSLVLYAYKGSQIRSRENAERYSRETALLLNNILLMSALSVVLLGTLLPLVHKQLGLGTISVGAPFFDQMFLIIMV
PFSLLLGVGPLIKWRRDEFSAIRKPVILSLIVMLVAGFALPYLLQDQLTVSAVLGTMMAVFIVLLSVYELQQRATHRSAF
WSGLTKLSRSHWGMVLAHLGVAMSVWGIAFSQNYSIERDVRMNVGDSVQIADYQFTFQGITEANGPNYLGGKAQVDIRRN
GQVEAILFAEKRFYTVSKMTMTEAAIDWGFTRDIYVALGENLGQDAWALRLYYKPFIRWIWFGGVFMALGGLLCMFDRRY
RFGKLFTKGQA

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=641, Percent_Identity=61.6224648985959, Blast_Score=793, Evalue=0.0,
Organism=Escherichia coli, GI1790511, Length=585, Percent_Identity=37.7777777777778, Blast_Score=316, Evalue=3e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 72808; Mature: 72808

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAELGNYALALSLAIAMLVAIFALWGAEKNHIQLMSLARPMTYGLFISLTVAFVALFYL
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHH
FAVNDFSVQYIVNNSNTNLPLHYRLSAVWGSHEGSLLLWIWLLTLWGAAVAWFSKQLPQE
HHHCCCEEEEEEECCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCHH
AVARVLGIMGIISIGFLIFVLFTSNPFDRTFPDFPVDGKELNPLLQDVGLIFHPPLLYMG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCHHHHHH
YVGFSVAFAFAIASLMTGKLDTAWARWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWW
HHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHEEECCCCEE
FWDPVENASLMPWIAGTALLHSLAVTEKRGSFKAWTVLLAILAFSLCLLGTFLVRSGILV
EECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
SVHAFASDPTRGLYILAYLVVVIGGSLVLYAYKGSQIRSRENAERYSRETALLLNNILLM
EEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHCHHHHHHHHHHHHHHHHHHHHH
SALSVVLLGTLLPLVHKQLGLGTISVGAPFFDQMFLIIMVPFSLLLGVGPLIKWRRDEFS
HHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
AIRKPVILSLIVMLVAGFALPYLLQDQLTVSAVLGTMMAVFIVLLSVYELQQRATHRSAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WSGLTKLSRSHWGMVLAHLGVAMSVWGIAFSQNYSIERDVRMNVGDSVQIADYQFTFQGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCEEEEEEEEEEECC
TEANGPNYLGGKAQVDIRRNGQVEAILFAEKRFYTVSKMTMTEAAIDWGFTRDIYVALGE
CCCCCCCCCCCCEEEEEECCCCEEEEEEECHHEEEHHHHHHHHHHHHCCCCHHHHHHHCC
NLGQDAWALRLYYKPFIRWIWFGGVFMALGGLLCMFDRRYRFGKLFTKGQA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCC
>Mature Secondary Structure
MIAELGNYALALSLAIAMLVAIFALWGAEKNHIQLMSLARPMTYGLFISLTVAFVALFYL
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHH
FAVNDFSVQYIVNNSNTNLPLHYRLSAVWGSHEGSLLLWIWLLTLWGAAVAWFSKQLPQE
HHHCCCEEEEEEECCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCHH
AVARVLGIMGIISIGFLIFVLFTSNPFDRTFPDFPVDGKELNPLLQDVGLIFHPPLLYMG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCHHHHHH
YVGFSVAFAFAIASLMTGKLDTAWARWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWW
HHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHEEECCCCEE
FWDPVENASLMPWIAGTALLHSLAVTEKRGSFKAWTVLLAILAFSLCLLGTFLVRSGILV
EECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
SVHAFASDPTRGLYILAYLVVVIGGSLVLYAYKGSQIRSRENAERYSRETALLLNNILLM
EEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHCHHHHHHHHHHHHHHHHHHHHH
SALSVVLLGTLLPLVHKQLGLGTISVGAPFFDQMFLIIMVPFSLLLGVGPLIKWRRDEFS
HHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
AIRKPVILSLIVMLVAGFALPYLLQDQLTVSAVLGTMMAVFIVLLSVYELQQRATHRSAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WSGLTKLSRSHWGMVLAHLGVAMSVWGIAFSQNYSIERDVRMNVGDSVQIADYQFTFQGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCEEEEEEEEEEECC
TEANGPNYLGGKAQVDIRRNGQVEAILFAEKRFYTVSKMTMTEAAIDWGFTRDIYVALGE
CCCCCCCCCCCCEEEEEECCCCEEEEEEECHHEEEHHHHHHHHHHHHCCCCHHHHHHHCC
NLGQDAWALRLYYKPFIRWIWFGGVFMALGGLLCMFDRRYRFGKLFTKGQA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]