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The map label for this gene is ccmD [H]

Identifier: 15601873

GI number: 15601873

Start: 7672

End: 7875

Strand: Direct

Name: ccmD [H]

Synonym: PM0008

Alternate gene names: 15601873

Gene position: 7672-7875 (Clockwise)

Preceding gene: 15601872

Following gene: 15601874

Centisome position: 0.34

GC content: 40.69

Gene sequence:

>204_bases
ATGTTTTTTGCAACTTGGCAGGATTTTTTCAATATGGGTGGCTACGGTTTTTATGTGTGGCTAGCCTATGGCATCAGCTT
GTTAGCGATTGTTGTATTAATTGTACAAAGTGTGAAGGAGAGAAAAGCGATTTTGCGTGATGTACTGCGTGAACAGCAAC
GCCAAGCACGTTTACAAAAGAATAAAACAAGAGGTGCGCTATGA

Upstream 100 bases:

>100_bases
CGCTAATCCGCTATCGTAGTGCGCTGCTGAAAGAAGACTATAAGCGTCCTTGGGTACAAGAATTAGCCACAAAACTCAAA
TAGGCTGGGGGAGAGATAAT

Downstream 100 bases:

>100_bases
CTCCAAGACGTAAGTCAAGAATGACTGTGATTTTATTTGTATTACTCGGGATTTCCATTGCTTCTGCCTTAGTGCTCTAT
GCATTACGCCAAAATATTGA

Product: CcmD

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CcmD [H]

Number of amino acids: Translated: 67; Mature: 67

Protein sequence:

>67_residues
MFFATWQDFFNMGGYGFYVWLAYGISLLAIVVLIVQSVKERKAILRDVLREQQRQARLQKNKTRGAL

Sequences:

>Translated_67_residues
MFFATWQDFFNMGGYGFYVWLAYGISLLAIVVLIVQSVKERKAILRDVLREQQRQARLQKNKTRGAL
>Mature_67_residues
MFFATWQDFFNMGGYGFYVWLAYGISLLAIVVLIVQSVKERKAILRDVLREQQRQARLQKNKTRGAL

Specific function: Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes (Potential) [H]

COG id: COG3114

COG function: function code U; Heme exporter protein D

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmD/CycX/HelD family [H]

Homologues:

Organism=Escherichia coli, GI1788526, Length=49, Percent_Identity=51.0204081632653, Blast_Score=61, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007078 [H]

Pfam domain/function: PF04995 CcmD [H]

EC number: NA

Molecular weight: Translated: 7854; Mature: 7854

Theoretical pI: Translated: 10.91; Mature: 10.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFATWQDFFNMGGYGFYVWLAYGISLLAIVVLIVQSVKERKAILRDVLREQQRQARLQK
CCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NKTRGAL
HHCCCCC
>Mature Secondary Structure
MFFATWQDFFNMGGYGFYVWLAYGISLLAIVVLIVQSVKERKAILRDVLREQQRQARLQK
CCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NKTRGAL
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]