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The map label for this gene is sodA

Identifier: 15601866

GI number: 15601866

Start: 185

End: 829

Strand: Reverse

Name: sodA

Synonym: PM0001

Alternate gene names: 15601866

Gene position: 829-185 (Counterclockwise)

Preceding gene: 15601867

Following gene: NA

Centisome position: 0.04

GC content: 42.95

Gene sequence:

>645_bases
ATGGCTTATACACTACCAGAATTAGGCTATGCCTACGATGCATTAGAACCCCATTTTGATGCAATGACGATGGAAATTCA
CCATTCAAAACATCATCAAGCCTATGTCAACAATGCCAATGCTGCATTGGAAAATTTACCAGAATTAGCACAAGGTTGCC
CAGGTCAATTATTAACTAAGTTAGCAGAGGTGCCTGCTGATAAATTGACAGCTATCCGCAATAACGTGGGTGGTCACTTA
AACCACTCGCTATTTTGGAAAAGCTTGAAAAAAGGTACCACGTTACAAGGCGCACTAAAAGATGCCATCGTGCGTGATTT
TGGCTCTGTGGAAGCCTTCCAAGCAGAATTTGAAAAAGCGGCAGCAACCCGTTTCGGTTCAGGTTGGGCATGGTTAGTCT
TACAAGAAAACGGTAAATTAGCCGTCGTATCCACCGCAAACCAAGATTCACCTGTAATGGGTAAAGCTATTGCGGGTTGC
GAAGGTTACCCATTATTAGGTTTAGACGTTTGGGAACACGCTTACTACTTGAAATTCCAAAACCGCCGTCCAGACTACAT
TAAAGAATTCTGGCACGTGGTAAACTGGGATTTCGTGGCAGAACGCTTCGAGAAAAAAGTTGAACATTGCAACTGCACAA
AATAA

Upstream 100 bases:

>100_bases
AACTGCAGAGAAATAATGATCTTAATCAAGTTTCCTGTTAAAATCTTGTTACTTTTTGGCAATAATGCCCCCTTACTTTC
ACTCAATAAAGGAAATAATT

Downstream 100 bases:

>100_bases
TCTCTCAATCCCCTCAATCGAGGGGATTTTTCTTTCTTCCTCCCTTTTCTCTCCCTCACTGTACTTTTTTTCAAATTTAT
GAGAGAGATCACAATCTATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MAYTLPELGYAYDALEPHFDAMTMEIHHSKHHQAYVNNANAALENLPELAQGCPGQLLTKLAEVPADKLTAIRNNVGGHL
NHSLFWKSLKKGTTLQGALKDAIVRDFGSVEAFQAEFEKAAATRFGSGWAWLVLQENGKLAVVSTANQDSPVMGKAIAGC
EGYPLLGLDVWEHAYYLKFQNRRPDYIKEFWHVVNWDFVAERFEKKVEHCNCTK

Sequences:

>Translated_214_residues
MAYTLPELGYAYDALEPHFDAMTMEIHHSKHHQAYVNNANAALENLPELAQGCPGQLLTKLAEVPADKLTAIRNNVGGHL
NHSLFWKSLKKGTTLQGALKDAIVRDFGSVEAFQAEFEKAAATRFGSGWAWLVLQENGKLAVVSTANQDSPVMGKAIAGC
EGYPLLGLDVWEHAYYLKFQNRRPDYIKEFWHVVNWDFVAERFEKKVEHCNCTK
>Mature_213_residues
AYTLPELGYAYDALEPHFDAMTMEIHHSKHHQAYVNNANAALENLPELAQGCPGQLLTKLAEVPADKLTAIRNNVGGHLN
HSLFWKSLKKGTTLQGALKDAIVRDFGSVEAFQAEFEKAAATRFGSGWAWLVLQENGKLAVVSTANQDSPVMGKAIAGCE
GYPLLGLDVWEHAYYLKFQNRRPDYIKEFWHVVNWDFVAERFEKKVEHCNCTK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family

Homologues:

Organism=Homo sapiens, GI67782307, Length=206, Percent_Identity=46.1165048543689, Blast_Score=172, Evalue=2e-43,
Organism=Homo sapiens, GI67782305, Length=206, Percent_Identity=46.1165048543689, Blast_Score=172, Evalue=2e-43,
Organism=Homo sapiens, GI67782309, Length=203, Percent_Identity=38.9162561576355, Blast_Score=136, Evalue=1e-32,
Organism=Escherichia coli, GI1790342, Length=206, Percent_Identity=75.7281553398058, Blast_Score=327, Evalue=3e-91,
Organism=Escherichia coli, GI1787946, Length=205, Percent_Identity=41.9512195121951, Blast_Score=160, Evalue=9e-41,
Organism=Caenorhabditis elegans, GI17506561, Length=205, Percent_Identity=43.4146341463415, Blast_Score=152, Evalue=2e-37,
Organism=Caenorhabditis elegans, GI17569479, Length=203, Percent_Identity=42.3645320197044, Blast_Score=151, Evalue=2e-37,
Organism=Saccharomyces cerevisiae, GI6321796, Length=212, Percent_Identity=40.0943396226415, Blast_Score=143, Evalue=2e-35,
Organism=Drosophila melanogaster, GI17136812, Length=205, Percent_Identity=42.9268292682927, Blast_Score=155, Evalue=2e-38,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): SODM_PASMU (Q9CPN6)

Other databases:

- EMBL:   AE004439
- RefSeq:   NP_244938.1
- ProteinModelPortal:   Q9CPN6
- SMR:   Q9CPN6
- PRIDE:   Q9CPN6
- GeneID:   1243348
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM0001
- NMPDR:   fig|272843.1.peg.1
- HOGENOM:   HBG507761
- OMA:   WDEVARR
- BioCyc:   PMUL272843:PM0001-MONOMER
- BRENDA:   1.15.1.1
- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831
- PANTHER:   PTHR11404
- PIRSF:   PIRSF000349
- PRINTS:   PR01703

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N; SSF46609 SODismutase; SSF54719 SODismutase

EC number: =1.15.1.1

Molecular weight: Translated: 24020; Mature: 23889

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYTLPELGYAYDALEPHFDAMTMEIHHSKHHQAYVNNANAALENLPELAQGCPGQLLTK
CCCCCCCCCCHHHCCCCCCCCEEEEEHHCHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHH
LAEVPADKLTAIRNNVGGHLNHSLFWKSLKKGTTLQGALKDAIVRDFGSVEAFQAEFEKA
HHHCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHH
AATRFGSGWAWLVLQENGKLAVVSTANQDSPVMGKAIAGCEGYPLLGLDVWEHAYYLKFQ
HHHHCCCCEEEEEEECCCCEEEEEECCCCCCCHHHHHCCCCCCCEECHHHHHHEEEEEEC
NRRPDYIKEFWHVVNWDFVAERFEKKVEHCNCTK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AYTLPELGYAYDALEPHFDAMTMEIHHSKHHQAYVNNANAALENLPELAQGCPGQLLTK
CCCCCCCCCHHHCCCCCCCCEEEEEHHCHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHH
LAEVPADKLTAIRNNVGGHLNHSLFWKSLKKGTTLQGALKDAIVRDFGSVEAFQAEFEKA
HHHCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHH
AATRFGSGWAWLVLQENGKLAVVSTANQDSPVMGKAIAGCEGYPLLGLDVWEHAYYLKFQ
HHHHCCCCEEEEEEECCCCEEEEEECCCCCCCHHHHHCCCCCCCEECHHHHHHEEEEEEC
NRRPDYIKEFWHVVNWDFVAERFEKKVEHCNCTK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100