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The map label for this gene is sycD

Identifier: 15835479

GI number: 15835479

Start: 1001801

End: 1002541

Strand: Direct

Name: sycD

Synonym: TC0865

Alternate gene names: NA

Gene position: 1001801-1002541 (Clockwise)

Preceding gene: 15835467

Following gene: 15835480

Centisome position: 93.37

GC content: 38.87

Gene sequence:

>741_bases
TTGTTAGTAGAAGTTGTTATTTTTTATTTTTTAGGAATTATCGCGATGAGCACTCCATCTTCTAATAATTCTAAAAAACC
TTCGGCCTCTTTTAATAAAAAATCACGTAGCCGCTTGGCCGAGATTGCTGCACAAAAAAAGGCTAAAGCTGAAGATTTAG
AGCAGAAATATCCTGTTCCTACGGAAGAGGAAACAAAAAAAGTTTTACTAGAAATTTTGCAAGGGTTAGGTGATGGGTTA
ACTCTTCAGCAAATCTTGGGGCTTTCTGACGTTCTTCTCGAAGAGATCTACACGGTAGCCTATACCTTCTATTCTCAAGG
AAAATATCGGGAAGCGATTGGCCTTTTCCAAATTTTAACCGCTTCTAAGCCTCAGTGCTACAAATACATCTTGGGGCTAA
GCTCTTGCTATCATCAGCTAAAAATGTACGATGAAGCAGCTTTTGGATTCTTCCTTGCTTTCGATGCACAACCAGAAAAC
CCCATCCCACCATACTACATTGCAGACAGTTTAATGCAGTTGGATCAACCCGAAGAATCTCAGAATTTCCTCGATATCAC
TATCGACATGTGCAAGAACAAACCAGAGTACAAAGTCCTCAAAGAGCGCTGCAGCATTATGAAGCAATCTTTAGATGCTA
TGTTGAAAAAAGAAAAACGCGCATCAGCAAAAAGCTCCGAATCCAAAACCTCTACTACAAAAGCAAAGAAATCATCTCCT
AACAAGAAAAAAGCAAAATAA

Upstream 100 bases:

>100_bases
TTAACTTATGTAAAAAGAATTAGTTATGATTGTTTAAATTGAAAGATTAAAAAATGTTTTTCTAATTAAAGTTGTTAAAT
CAATCCAATCACATTTAATA

Downstream 100 bases:

>100_bases
ATAACGAAGCAGCACAGAGTCTCACCTATGAGTAAAAAACATAAGCCTAATAAAGAGCGCTCTTCTTCTAAGTCTCAGGT
AAAGCCTGCACATCTTTCAA

Product: type III secretion chaperone SycD

Products: NA

Alternate protein names: Low Calcium Response Protein H; LcrH/SycD Chaperone Family Protein; Type III Secretion Chaperone Low Calcium Response Protein H; Type III Secretion Chaperone SycD/LcrH; Regulatory Protein

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MLVEVVIFYFLGIIAMSTPSSNNSKKPSASFNKKSRSRLAEIAAQKKAKAEDLEQKYPVPTEEETKKVLLEILQGLGDGL
TLQQILGLSDVLLEEIYTVAYTFYSQGKYREAIGLFQILTASKPQCYKYILGLSSCYHQLKMYDEAAFGFFLAFDAQPEN
PIPPYYIADSLMQLDQPEESQNFLDITIDMCKNKPEYKVLKERCSIMKQSLDAMLKKEKRASAKSSESKTSTTKAKKSSP
NKKKAK

Sequences:

>Translated_246_residues
MLVEVVIFYFLGIIAMSTPSSNNSKKPSASFNKKSRSRLAEIAAQKKAKAEDLEQKYPVPTEEETKKVLLEILQGLGDGL
TLQQILGLSDVLLEEIYTVAYTFYSQGKYREAIGLFQILTASKPQCYKYILGLSSCYHQLKMYDEAAFGFFLAFDAQPEN
PIPPYYIADSLMQLDQPEESQNFLDITIDMCKNKPEYKVLKERCSIMKQSLDAMLKKEKRASAKSSESKTSTTKAKKSSP
NKKKAK
>Mature_246_residues
MLVEVVIFYFLGIIAMSTPSSNNSKKPSASFNKKSRSRLAEIAAQKKAKAEDLEQKYPVPTEEETKKVLLEILQGLGDGL
TLQQILGLSDVLLEEIYTVAYTFYSQGKYREAIGLFQILTASKPQCYKYILGLSSCYHQLKMYDEAAFGFFLAFDAQPEN
PIPPYYIADSLMQLDQPEESQNFLDITIDMCKNKPEYKVLKERCSIMKQSLDAMLKKEKRASAKSSESKTSTTKAKKSSP
NKKKAK

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27765; Mature: 27765

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVEVVIFYFLGIIAMSTPSSNNSKKPSASFNKKSRSRLAEIAAQKKAKAEDLEQKYPVP
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TEEETKKVLLEILQGLGDGLTLQQILGLSDVLLEEIYTVAYTFYSQGKYREAIGLFQILT
CHHHHHHHHHHHHHHCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
ASKPQCYKYILGLSSCYHQLKMYDEAAFGFFLAFDAQPENPIPPYYIADSLMQLDQPEES
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHCCCCCCC
QNFLDITIDMCKNKPEYKVLKERCSIMKQSLDAMLKKEKRASAKSSESKTSTTKAKKSSP
CCCEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
NKKKAK
CCCCCC
>Mature Secondary Structure
MLVEVVIFYFLGIIAMSTPSSNNSKKPSASFNKKSRSRLAEIAAQKKAKAEDLEQKYPVP
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TEEETKKVLLEILQGLGDGLTLQQILGLSDVLLEEIYTVAYTFYSQGKYREAIGLFQILT
CHHHHHHHHHHHHHHCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
ASKPQCYKYILGLSSCYHQLKMYDEAAFGFFLAFDAQPENPIPPYYIADSLMQLDQPEES
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHCCCCCCC
QNFLDITIDMCKNKPEYKVLKERCSIMKQSLDAMLKKEKRASAKSSESKTSTTKAKKSSP
CCCEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
NKKKAK
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA