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The map label for this gene is sctS

Identifier: 15835466

GI number: 15835466

Start: 988303

End: 988587

Strand: Direct

Name: sctS

Synonym: TC0852

Alternate gene names: 15835466

Gene position: 988303-988587 (Clockwise)

Preceding gene: 15835465

Following gene: 15835467

Centisome position: 92.11

GC content: 37.54

Gene sequence:

>285_bases
ATGCTGATGCTTGCAACAAGTTTCAAATCCATGCTGTTTGAATATTCATATGAAGCCCTCTTGTTAATTCTAATCATTTC
TGCTCCTCCAATCATTTTGGCCTCTATTGTTGGGATTATGGTGGCCATTTTTCAAGCGGCAACACAGATTCAAGAGCAAA
CATTTGCCTTTGCCATTAAGTTAGTCGTTATTTTCGGAACGCTTATGATTACAGGCGGATGGTTGTGTAGTATGATTTTA
CGATTTGCGGCTCAAATTTTTACAAATTTTTACAAGTGGAAGTAG

Upstream 100 bases:

>100_bases
CCATCTCTCTTCCTCTTAAGCTTCTTCTTGTGGTCATGGTAGATGGATGGACCTTACTACTCGAAGGATTGATGATTAGT
TTTAAATAAGAGACTTCCCT

Downstream 100 bases:

>100_bases
ATCGCCATGGCCACTCTACCTGATGTTCTTTCTGGACTAGGGTCTTCCTATATCGATTATATATTCCAGAAGCCTGCTGA
TTACGTTTGGACCGTTTTCC

Product: type III secretion inner membrane protein SctS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 94

Protein sequence:

>94_residues
MLMLATSFKSMLFEYSYEALLLILIISAPPIILASIVGIMVAIFQAATQIQEQTFAFAIKLVVIFGTLMITGGWLCSMIL
RFAAQIFTNFYKWK

Sequences:

>Translated_94_residues
MLMLATSFKSMLFEYSYEALLLILIISAPPIILASIVGIMVAIFQAATQIQEQTFAFAIKLVVIFGTLMITGGWLCSMIL
RFAAQIFTNFYKWK
>Mature_94_residues
MLMLATSFKSMLFEYSYEALLLILIISAPPIILASIVGIMVAIFQAATQIQEQTFAFAIKLVVIFGTLMITGGWLCSMIL
RFAAQIFTNFYKWK

Specific function: Component of the Yop secretion machinery [H]

COG id: COG4794

COG function: function code U; Type III secretory pathway, component EscS

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliQ/MopD/SpaQ family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002191
- InterPro:   IPR006306 [H]

Pfam domain/function: PF01313 Bac_export_3 [H]

EC number: NA

Molecular weight: Translated: 10578; Mature: 10578

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
6.4 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
6.4 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMLATSFKSMLFEYSYEALLLILIISAPPIILASIVGIMVAIFQAATQIQEQTFAFAIK
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVVIFGTLMITGGWLCSMILRFAAQIFTNFYKWK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLMLATSFKSMLFEYSYEALLLILIISAPPIILASIVGIMVAIFQAATQIQEQTFAFAIK
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVVIFGTLMITGGWLCSMILRFAAQIFTNFYKWK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8300512; 9746557; 9748454; 11586360 [H]