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The map label for this gene is sctR

Identifier: 15835465

GI number: 15835465

Start: 987356

End: 988291

Strand: Direct

Name: sctR

Synonym: TC0851

Alternate gene names: 15835465

Gene position: 987356-988291 (Clockwise)

Preceding gene: 15835464

Following gene: 15835466

Centisome position: 92.02

GC content: 42.63

Gene sequence:

>936_bases
ATGCGATTGATTTGTCGAATTTTCTTCTTTCTATGCGTACTTAGTGCTCCCCAGGGCTTTTCCAACGTCTGTTCTGATGC
TTCCTGTTCTAAAGTACAGGGATCCTCTTCTTGCCGACCATGTGGGGCTACTCCTCAACAGGAGATTCAGGATTCTCCAG
GAACCCCACCCCCCCCCTTTCGCTGTCCATCTTACAGACAACCAGTAGAAGCTCAGGATCTCCTTGCTTCTCAAGAAGAT
CTTTCTTCCGGAGCCTTTTCAGACACGTATCCAGATTTAACCACACAAGCGGTTATTATATTATTCCTTGCGCTTTCTCC
CTTTCTGGTTATGCTTCTGACCTCCTATCTGAAGATTATTATCACGTTAGTCCTACTCAGAAATGCCTTGGGAGTACAAC
AAACTCCTCCTAGCCAAGTCCTCAACGGGATTGCCTTGATTCTGTCTATCTATGTCATGTTCCCTACTGGAATGGCTATG
TATAACGACGCTAAAAAAGGCATTGAATCTGATGCCGTTCCTCGAGACCTTTTTTCTGCAGAGGGGGCGGAAACGGTATT
TGTTGCCTTAAATAAATCGAAAGAACCTCTTCGTTCTTTCCTAATTAACAACACCCCTAAACCACAAATTCAAAGTTTTT
ATAAAATTTCACAGAAAACATTCCCTCCGGAACTTCGCCAACAATTGACCCCTTCTGATTTTGTAGTCGTCATTCCTGCT
TTCATCATGGGCCAAATTAAGAATGCTTTTGAAATTGGGGTTTTGATTTATTTGCCTTTCTTTGTCATCGATTTGGTAAC
CGCAAACGTTTTGGTTGCTATGCAGATGATGATGCTTTCTCCACTGTCCATCTCTCTTCCTCTTAAGCTTCTTCTTGTGG
TCATGGTAGATGGATGGACCTTACTACTCGAAGGATTGATGATTAGTTTTAAATAA

Upstream 100 bases:

>100_bases
CTTAGAACAAGCTTTCTCCGCTGCCTTGAAACAAAAACAACCTACAGAAACCTTTTCAACCGATCAGACTCAAAGCAAAG
AAGGCTAGGTATTTGATTTT

Downstream 100 bases:

>100_bases
GAGACTTCCCTATGCTGATGCTTGCAACAAGTTTCAAATCCATGCTGTTTGAATATTCATATGAAGCCCTCTTGTTAATT
CTAATCATTTCTGCTCCTCC

Product: type III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MRLICRIFFFLCVLSAPQGFSNVCSDASCSKVQGSSSCRPCGATPQQEIQDSPGTPPPPFRCPSYRQPVEAQDLLASQED
LSSGAFSDTYPDLTTQAVIILFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGMAM
YNDAKKGIESDAVPRDLFSAEGAETVFVALNKSKEPLRSFLINNTPKPQIQSFYKISQKTFPPELRQQLTPSDFVVVIPA
FIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLVVMVDGWTLLLEGLMISFK

Sequences:

>Translated_311_residues
MRLICRIFFFLCVLSAPQGFSNVCSDASCSKVQGSSSCRPCGATPQQEIQDSPGTPPPPFRCPSYRQPVEAQDLLASQED
LSSGAFSDTYPDLTTQAVIILFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGMAM
YNDAKKGIESDAVPRDLFSAEGAETVFVALNKSKEPLRSFLINNTPKPQIQSFYKISQKTFPPELRQQLTPSDFVVVIPA
FIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLVVMVDGWTLLLEGLMISFK
>Mature_311_residues
MRLICRIFFFLCVLSAPQGFSNVCSDASCSKVQGSSSCRPCGATPQQEIQDSPGTPPPPFRCPSYRQPVEAQDLLASQED
LSSGAFSDTYPDLTTQAVIILFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGMAM
YNDAKKGIESDAVPRDLFSAEGAETVFVALNKSKEPLRSFLINNTPKPQIQSFYKISQKTFPPELRQQLTPSDFVVVIPA
FIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLVVMVDGWTLLLEGLMISFK

Specific function: Important for pathogenicity [H]

COG id: COG1338

COG function: function code NU; Flagellar biosynthesis pathway, component FliP

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliP/mopC/spaP family [H]

Homologues:

Organism=Escherichia coli, GI1788259, Length=234, Percent_Identity=35.8974358974359, Blast_Score=132, Evalue=2e-32,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005838
- InterPro:   IPR005773 [H]

Pfam domain/function: PF00813 FliP [H]

EC number: NA

Molecular weight: Translated: 34186; Mature: 34186

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS01061 FLIP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLICRIFFFLCVLSAPQGFSNVCSDASCSKVQGSSSCRPCGATPQQEIQDSPGTPPPPF
CHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCC
RCPSYRQPVEAQDLLASQEDLSSGAFSDTYPDLTTQAVIILFLALSPFLVMLLTSYLKII
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGMAMYNDAKKGIESDAVPRDLFSA
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHC
EGAETVFVALNKSKEPLRSFLINNTPKPQIQSFYKISQKTFPPELRQQLTPSDFVVVIPA
CCCCEEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHH
FIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLVVMVDGWT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHH
LLLEGLMISFK
HHHHHHHHCCC
>Mature Secondary Structure
MRLICRIFFFLCVLSAPQGFSNVCSDASCSKVQGSSSCRPCGATPQQEIQDSPGTPPPPF
CHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCC
RCPSYRQPVEAQDLLASQEDLSSGAFSDTYPDLTTQAVIILFLALSPFLVMLLTSYLKII
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGMAMYNDAKKGIESDAVPRDLFSA
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHC
EGAETVFVALNKSKEPLRSFLINNTPKPQIQSFYKISQKTFPPELRQQLTPSDFVVVIPA
CCCCEEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHH
FIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLVVMVDGWT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHH
LLLEGLMISFK
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1312532 [H]