Click here to switch to the map view.

The map label for this gene is sctL

Identifier: 15835464

GI number: 15835464

Start: 986636

End: 987343

Strand: Direct

Name: sctL

Synonym: TC0850

Alternate gene names: 15835464

Gene position: 986636-987343 (Clockwise)

Preceding gene: 15835463

Following gene: 15835465

Centisome position: 91.96

GC content: 42.51

Gene sequence:

>708_bases
TTGGCTTTGCCAAAGGATCCCCACCTCGTCAAAAGGATGAAATTTTTCAGTTTAATATTTAAAGACCAAGAGGTCGTCCC
GAATAAAAAAGTTCTCTCTCCAGACGCCTATACTACCGTGTTAAATGCCCAAGAACTTCTAGAAAAAACACAAGAAGATT
GCGATGCTTACACACAGCATACGCATGAAGAATGTGCAAATCTCCGAGCAGAAGCAAAAAATCAGGGATTTCAAGAAGGG
AGTGAGGCTTGGAGCAAACAGCTCGCCTTTCTCATTACAGAAACACAGGCTATGCGAGACCAAATCAAATCCTCTCTCGT
GCCTTTAGCTATTGCAAGTGTGAAGAAAATTATCGGTAAGGAATTAGAAACAAAACCTGAGACCGTAGTATCTATCATTT
CAGAGTCTTTAAAAGAGCTCACACAAAACAAGCGGATCGTGATTCATATAAATCCCCAGGATCTTGCCATTGTCGAGCAA
CATCGCCCAGAGTTAAAAAAACTCGTAGAATATGCTGATGTGCTTTTACTCTCTCCTAAAGCTAGTGTGTCCCCCGGAGG
ATGCATTATTGAGACTGAGACTGGCATCGTGAATGCTCAGCTTGATGTGCAACTAGCCGCCTTAGAACAAGCTTTCTCCG
CTGCCTTGAAACAAAAACAACCTACAGAAACCTTTTCAACCGATCAGACTCAAAGCAAAGAAGGCTAG

Upstream 100 bases:

>100_bases
GTAAAAAAGAATGAGATCCTTGTCCGGCTACCCATAATAAGGACATACCTCATCGCGTTGGGAATAAAGTAACGAGCAAA
GGAGCGAGGTTCCCTGCCTG

Downstream 100 bases:

>100_bases
GTATTTGATTTTATGCGATTGATTTGTCGAATTTTCTTCTTTCTATGCGTACTTAGTGCTCCCCAGGGCTTTTCCAACGT
CTGTTCTGATGCTTCCTGTT

Product: type III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MALPKDPHLVKRMKFFSLIFKDQEVVPNKKVLSPDAYTTVLNAQELLEKTQEDCDAYTQHTHEECANLRAEAKNQGFQEG
SEAWSKQLAFLITETQAMRDQIKSSLVPLAIASVKKIIGKELETKPETVVSIISESLKELTQNKRIVIHINPQDLAIVEQ
HRPELKKLVEYADVLLLSPKASVSPGGCIIETETGIVNAQLDVQLAALEQAFSAALKQKQPTETFSTDQTQSKEG

Sequences:

>Translated_235_residues
MALPKDPHLVKRMKFFSLIFKDQEVVPNKKVLSPDAYTTVLNAQELLEKTQEDCDAYTQHTHEECANLRAEAKNQGFQEG
SEAWSKQLAFLITETQAMRDQIKSSLVPLAIASVKKIIGKELETKPETVVSIISESLKELTQNKRIVIHINPQDLAIVEQ
HRPELKKLVEYADVLLLSPKASVSPGGCIIETETGIVNAQLDVQLAALEQAFSAALKQKQPTETFSTDQTQSKEG
>Mature_234_residues
ALPKDPHLVKRMKFFSLIFKDQEVVPNKKVLSPDAYTTVLNAQELLEKTQEDCDAYTQHTHEECANLRAEAKNQGFQEGS
EAWSKQLAFLITETQAMRDQIKSSLVPLAIASVKKIIGKELETKPETVVSIISESLKELTQNKRIVIHINPQDLAIVEQH
RPELKKLVEYADVLLLSPKASVSPGGCIIETETGIVNAQLDVQLAALEQAFSAALKQKQPTETFSTDQTQSKEG

Specific function: Required for the export process of the Yop proteins [H]

COG id: COG1317

COG function: function code NU; Flagellar biosynthesis/type III secretory pathway protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018035
- InterPro:   IPR012842 [H]

Pfam domain/function: PF02108 FliH [H]

EC number: NA

Molecular weight: Translated: 26151; Mature: 26020

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALPKDPHLVKRMKFFSLIFKDQEVVPNKKVLSPDAYTTVLNAQELLEKTQEDCDAYTQH
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
THEECANLRAEAKNQGFQEGSEAWSKQLAFLITETQAMRDQIKSSLVPLAIASVKKIIGK
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELETKPETVVSIISESLKELTQNKRIVIHINPQDLAIVEQHRPELKKLVEYADVLLLSPK
HCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHCHHHHHHHHHHHHHEECCC
ASVSPGGCIIETETGIVNAQLDVQLAALEQAFSAALKQKQPTETFSTDQTQSKEG
CCCCCCCEEEEECCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ALPKDPHLVKRMKFFSLIFKDQEVVPNKKVLSPDAYTTVLNAQELLEKTQEDCDAYTQH
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
THEECANLRAEAKNQGFQEGSEAWSKQLAFLITETQAMRDQIKSSLVPLAIASVKKIIGK
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELETKPETVVSIISESLKELTQNKRIVIHINPQDLAIVEQHRPELKKLVEYADVLLLSPK
HCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHCHHHHHHHHHHHHHEECCC
ASVSPGGCIIETETGIVNAQLDVQLAALEQAFSAALKQKQPTETFSTDQTQSKEG
CCCCCCCEEEEECCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1860816 [H]