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The map label for this gene is sctJ

Identifier: 15835462

GI number: 15835462

Start: 984580

End: 985566

Strand: Direct

Name: sctJ

Synonym: TC0848

Alternate gene names: 15835462

Gene position: 984580-985566 (Clockwise)

Preceding gene: 15835461

Following gene: 15835463

Centisome position: 91.76

GC content: 43.06

Gene sequence:

>987_bases
ATGTTTCGTTATACTCTTTCTCGATCCTTATTTTTTATTTTTGCTCTTTTTTGTTGTTCGGCATGTGACAGTCGCTCCAT
GATTGCTCATGGACTCACTGGACGTGAGGCCAACGAGATTGTGGTTCTCCTAGTAAGTAAAGGAGTATCCGCACAAAAAG
TTCCTCAAGTAGCTGGTTCGTCAGGAGGGGGATCTTCAGAGCAACTTTGGGATATCTCGGTTCCTGCAGCACAAATCACA
GAAGCTCTTGCTATCCTAAATCAGGCAGGGCTCCCTCGAATGAAAGGAACTAGCCTCCTCGATCTTTTTGCGAAACAAGG
GCTTGTGCCTTCTGAAATGCAAGAAAAAATCCGTTACCAAGAAGGTCTTTCTGAACAAATGGCTACAACCATTAGAAAGA
TGGATGGTATCGTTGATGCTAGTGTACAGATTTCCTTCTCTCCAGAAGAAGATCAACTTCCACTAACAGCCTCTGTTTAT
ATTAAACACAGAGGTGTTTTAGATAATCCTAACAGCATTATGGTTTCAAAAATCAAACGCTTGGTAGCGAGTGCTGTTCC
TGGCCTTTGTCCTGAAAATGTTTCTGTAGTAAGCGACCGCGCTTCTTACAGTGACATTACTATTAACGGACCTTGGGGCC
TCTCCGATGAGATCGATTATGTCTCCGTTTGGGGCATTATCCTTGCTAAGAATTCTCTCACTAAATTCCGACTTGTTTTC
TATTTCCTGATTCTTCTGCTCTTTGTTCTTTCTTGCGGCCTTCTTTGGGTTATTTGGAAAACTCACTCATTAATTGGTGC
TTTGGGAGGAACAAAAGGGTTCTTTGATCCTGCTCCATACTCACAGCTTGCTTTCACACAAAATAAGGCAGCTGCTGCTA
AGGAGACTTCAGAAGCAACAGAAAGCACAGGAGGGGCTCAGCCAGCATCAGAAGAATCCCCTAAAGAGAATGTAGAAAAA
CAAGAAGAGAATAACGAGGACGCTTAA

Upstream 100 bases:

>100_bases
CATAACCCACTAAGCTTAAACATCCTTTAACATAAAAAATGTTCCCGATTGGCACTAATCTCCCCATTTGCTATGGTGAG
TAAAAAGGTGTGCGTGGGTT

Downstream 100 bases:

>100_bases
GTGACTGCAAATACATTTGGGGTTCTTAATATCCTAATGAAGCATGCAAAAGCCGATGATCTCGCGCAGTTTTTACCAGA
ACATCTGTTGTTAGACTCGC

Product: type III secretion protein SctJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MFRYTLSRSLFFIFALFCCSACDSRSMIAHGLTGREANEIVVLLVSKGVSAQKVPQVAGSSGGGSSEQLWDISVPAAQIT
EALAILNQAGLPRMKGTSLLDLFAKQGLVPSEMQEKIRYQEGLSEQMATTIRKMDGIVDASVQISFSPEEDQLPLTASVY
IKHRGVLDNPNSIMVSKIKRLVASAVPGLCPENVSVVSDRASYSDITINGPWGLSDEIDYVSVWGIILAKNSLTKFRLVF
YFLILLLFVLSCGLLWVIWKTHSLIGALGGTKGFFDPAPYSQLAFTQNKAAAAKETSEATESTGGAQPASEESPKENVEK
QEENNEDA

Sequences:

>Translated_328_residues
MFRYTLSRSLFFIFALFCCSACDSRSMIAHGLTGREANEIVVLLVSKGVSAQKVPQVAGSSGGGSSEQLWDISVPAAQIT
EALAILNQAGLPRMKGTSLLDLFAKQGLVPSEMQEKIRYQEGLSEQMATTIRKMDGIVDASVQISFSPEEDQLPLTASVY
IKHRGVLDNPNSIMVSKIKRLVASAVPGLCPENVSVVSDRASYSDITINGPWGLSDEIDYVSVWGIILAKNSLTKFRLVF
YFLILLLFVLSCGLLWVIWKTHSLIGALGGTKGFFDPAPYSQLAFTQNKAAAAKETSEATESTGGAQPASEESPKENVEK
QEENNEDA
>Mature_328_residues
MFRYTLSRSLFFIFALFCCSACDSRSMIAHGLTGREANEIVVLLVSKGVSAQKVPQVAGSSGGGSSEQLWDISVPAAQIT
EALAILNQAGLPRMKGTSLLDLFAKQGLVPSEMQEKIRYQEGLSEQMATTIRKMDGIVDASVQISFSPEEDQLPLTASVY
IKHRGVLDNPNSIMVSKIKRLVASAVPGLCPENVSVVSDRASYSDITINGPWGLSDEIDYVSVWGIILAKNSLTKFRLVF
YFLILLLFVLSCGLLWVIWKTHSLIGALGGTKGFFDPAPYSQLAFTQNKAAAAKETSEATESTGGAQPASEESPKENVEK
QEENNEDA

Specific function: Necessary for both basic pathogenicity and the induction of the hypersensitive response in resistant plants. Could be a part of a specific transport apparatus or a secretion apparatus that is required for pathogenicity. Hrp proteins may form a complex (tu

COG id: COG4669

COG function: function code U; Type III secretory pathway, lipoprotein EscJ

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yscJ lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003282
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF [H]

EC number: NA

Molecular weight: Translated: 35524; Mature: 35524

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRYTLSRSLFFIFALFCCSACDSRSMIAHGLTGREANEIVVLLVSKGVSAQKVPQVAGS
CCEEHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHCCC
SGGGSSEQLWDISVPAAQITEALAILNQAGLPRMKGTSLLDLFAKQGLVPSEMQEKIRYQ
CCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
EGLSEQMATTIRKMDGIVDASVQISFSPEEDQLPLTASVYIKHRGVLDNPNSIMVSKIKR
HCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHH
LVASAVPGLCPENVSVVSDRASYSDITINGPWGLSDEIDYVSVWGIILAKNSLTKFRLVF
HHHHHCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHH
YFLILLLFVLSCGLLWVIWKTHSLIGALGGTKGFFDPAPYSQLAFTQNKAAAAKETSEAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHH
ESTGGAQPASEESPKENVEKQEENNEDA
HHCCCCCCCCCCCCHHHHHHHHCCCCCC
>Mature Secondary Structure
MFRYTLSRSLFFIFALFCCSACDSRSMIAHGLTGREANEIVVLLVSKGVSAQKVPQVAGS
CCEEHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHCCC
SGGGSSEQLWDISVPAAQITEALAILNQAGLPRMKGTSLLDLFAKQGLVPSEMQEKIRYQ
CCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
EGLSEQMATTIRKMDGIVDASVQISFSPEEDQLPLTASVYIKHRGVLDNPNSIMVSKIKR
HCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHH
LVASAVPGLCPENVSVVSDRASYSDITINGPWGLSDEIDYVSVWGIILAKNSLTKFRLVF
HHHHHCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHH
YFLILLLFVLSCGLLWVIWKTHSLIGALGGTKGFFDPAPYSQLAFTQNKAAAAKETSEAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHH
ESTGGAQPASEESPKENVEKQEENNEDA
HHCCCCCCCCCCCCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1472717 [H]