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The map label for this gene is rplW

Identifier: 15835427

GI number: 15835427

Start: 946972

End: 947307

Strand: Reverse

Name: rplW

Synonym: TC0813

Alternate gene names: 15835427

Gene position: 947307-946972 (Counterclockwise)

Preceding gene: 15835428

Following gene: 15835426

Centisome position: 88.29

GC content: 40.48

Gene sequence:

>336_bases
ATGAAAGATCCTTATGATGTTGTCAAAAGACATTATGTGACCGAGAAGGCGAAAATGCTGGAAGGATTAAGTCTCGGGGG
CGGAGAAGGCAAGAAAAAAGGTAGTTTCTGTAAAGATCCTAAGTACACATTTGTTGTTGCCGGGGATGCAACTAAGCCTA
TGATTGCTGAAGCCATAGAGGCAATTTATTCTAATAAAGGTGTGAAGGTTAAAAAAGTGAACACAGTTTGTGTAAAACCT
CAGCCTACGAGAATATTCCGAGGGAAAAGAAAAGGAAGAACAGCCGGTTTCAAGAAGGCTATTGTGACTTTTGTTGATGG
TCACTCTATTGGTTAG

Upstream 100 bases:

>100_bases
CATTGCCGCTGCTAGAAATATTGTGGTTTCAGAGAAAGCTTTGGAACTACTTGTCGAGAATCTTGTCTCTACAACAAAAG
ATTAAAGGGGAAGCTAAAAC

Downstream 100 bases:

>100_bases
TAAAGAAGGAAGAGAAGAATAACATGTTTAAAAAGTTTAAGCCAGTAACTCCCGGGACGAGACAGTTGATTCTGCCTTCT
TTTGATGAGCTTACTACTCA

Product: 50S ribosomal protein L23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MKDPYDVVKRHYVTEKAKMLEGLSLGGGEGKKKGSFCKDPKYTFVVAGDATKPMIAEAIEAIYSNKGVKVKKVNTVCVKP
QPTRIFRGKRKGRTAGFKKAIVTFVDGHSIG

Sequences:

>Translated_111_residues
MKDPYDVVKRHYVTEKAKMLEGLSLGGGEGKKKGSFCKDPKYTFVVAGDATKPMIAEAIEAIYSNKGVKVKKVNTVCVKP
QPTRIFRGKRKGRTAGFKKAIVTFVDGHSIG
>Mature_111_residues
MKDPYDVVKRHYVTEKAKMLEGLSLGGGEGKKKGSFCKDPKYTFVVAGDATKPMIAEAIEAIYSNKGVKVKKVNTVCVKP
QPTRIFRGKRKGRTAGFKKAIVTFVDGHSIG

Specific function: One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome

COG id: COG0089

COG function: function code J; Ribosomal protein L23

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L23P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL23_CHLMU (Q9PJL6)

Other databases:

- EMBL:   AE002160
- PIR:   B81661
- RefSeq:   NP_297186.1
- ProteinModelPortal:   Q9PJL6
- SMR:   Q9PJL6
- GeneID:   1246180
- GenomeReviews:   AE002160_GR
- KEGG:   cmu:TC0813
- TIGR:   TC_0813
- HOGENOM:   HBG439330
- OMA:   KSVNTIC
- ProtClustDB:   PRK05738
- BioCyc:   CMUR243161:TC_0813-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01369_B
- InterPro:   IPR012677
- InterPro:   IPR012678
- InterPro:   IPR013025
- Gene3D:   G3DSA:3.30.70.330

Pfam domain/function: PF00276 Ribosomal_L23; SSF54189 L23_L15e_core

EC number: NA

Molecular weight: Translated: 12134; Mature: 12134

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: PS00050 RIBOSOMAL_L23

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDPYDVVKRHYVTEKAKMLEGLSLGGGEGKKKGSFCKDPKYTFVVAGDATKPMIAEAIE
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHH
AIYSNKGVKVKKVNTVCVKPQPTRIFRGKRKGRTAGFKKAIVTFVDGHSIG
HHHCCCCEEEEEEEEEEECCCCCHHHCCCCCCCCCCHHHHHHEEECCCCCC
>Mature Secondary Structure
MKDPYDVVKRHYVTEKAKMLEGLSLGGGEGKKKGSFCKDPKYTFVVAGDATKPMIAEAIE
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHH
AIYSNKGVKVKKVNTVCVKPQPTRIFRGKRKGRTAGFKKAIVTFVDGHSIG
HHHCCCCEEEEEEEEEEECCCCCHHHCCCCCCCCCCHHHHHHEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10684935