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The map label for this gene is secY

Identifier: 15835411

GI number: 15835411

Start: 938867

End: 940240

Strand: Reverse

Name: secY

Synonym: TC0797

Alternate gene names: 15835411

Gene position: 940240-938867 (Counterclockwise)

Preceding gene: 15835412

Following gene: 15835410

Centisome position: 87.63

GC content: 41.7

Gene sequence:

>1374_bases
ATGGCTACATTGCGACAAGTATTTTCGATTTCCGAATTGCGACAAAAAATATTCTTCACATTTTCTTTGCTTGCGTTATG
TAGAATCGGGGTATTCATCCCTGTACCGGGAATTAATGGAGACCGTGCTGTAGCCTATTTTAACCAGCTATTAGGGTCTA
GCCAGAATTTGTTTCAGTTAGCTGATATTTTTTCTGGGGGAGCTTTTGCTCAGATGACGGTTATAGCTCTTGGAGTGGTT
CCGTACATCTCGGCTTCAATTATTGTGCAACTTCTTGTGGTCTTTATGCCTACTCTGCAAAGAGAAATGCGGGAGGCTCC
TGACCAAGGAAAGCGTAAATTGGGGCGAATGACGAGGCTCTTCACCCTGCTTCTTGCATGTGTGCAATCTTTGCTTTTTG
CGAAGTTTGCTTTGCGAATGAACCTCGTTGTTCCTGGAATTGTTCTCCCCGCAATGCTATCTCTGAAGCTGTTTGGAATT
CCTTGTGTATTTTATTTAACAACTGTTGTGGTAATGACAACAGGAACCCTTTTACTTATGTGGATTGGAGAACAGATTTC
TGACAAGGGAATTGGTAACGGGATTAGCCTGATTATCACCCTAGGAATGTTAGCTTCGTTCCCCTCTGTTTTAGGGTCCA
TATTTAATAAATTAAATTTGGGATCTCAGGACCCTTCTGAATTCGGGATAGTCTCTCTCCTAGTTCTTTGTGCAGTCTTC
GTTTTTGTTCTGATGGCGACTGTATTAATTATTGAGGGGGTAAGAAAAGTTCCGGTTCAGCATGCACGTAGAATTATTGG
AAGAAGAGAGGTCTTAGGAGGAGGGTCTTATCTTCCTCTAAAGGTGAATTATGCGGGAGTGATTCCAGTTATTTTTGCCT
CTTCGCTTCTCATGTTCCCCGCCACTATTGGACAATTCCTTTCCTCAGAGTCTTCTTGGTTGAAGCGAATAGCAACTATG
TTGTCCCCTGGAAGTGTGGTTTATTCCATTTTTTACGTGTTGCTTATTATATTTTTTACCTATTTCTGGACAGCTACGCA
GTTTCGGCCAGAGCAAATAGCTTCTGAAATGAAAAAAAATGGAGCTTTTATTCCTGGTATCCGACAAGGGAAACCAACCC
AGTCCTATCTTGAATATACAATGAATAGGGTAACTTTACTGGGGGCAGTATTTTTAGCTGTTGTAGCTATATTACCTTCT
ATTTTGGGAAGGATTTTAAGAGTTGACGCAAACGTCAGCTACTTTTTGGGTGGAACTGCTATGCTTATCGTAGTCGGCGT
CGTTTTGGATACGATGAAGCAAATAGATGCTTTTCTTTTAGTCCGACGTTATGACGGAGTTTTAAAGAAAGACCGCCCCA
AAGGAAGACGTTGA

Upstream 100 bases:

>100_bases
CTGGATAAGAAATTAGTCTGGAAAGATGCTGCAATAGTGTTGTCAGAAGGAGTAAAAAGTCTTATCGAGACTGTTTAACT
AGAACTTTTGGGTAAAGTTT

Downstream 100 bases:

>100_bases
AAAATAACAATTTTTGACCTAAGATGCTTATACTACTTTAAGGGAGGCCCTTCGTATGCCACGCATCATTGGAATAGATA
TTCCTGCGAAAAAGAAATTA

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 457; Mature: 456

Protein sequence:

>457_residues
MATLRQVFSISELRQKIFFTFSLLALCRIGVFIPVPGINGDRAVAYFNQLLGSSQNLFQLADIFSGGAFAQMTVIALGVV
PYISASIIVQLLVVFMPTLQREMREAPDQGKRKLGRMTRLFTLLLACVQSLLFAKFALRMNLVVPGIVLPAMLSLKLFGI
PCVFYLTTVVVMTTGTLLLMWIGEQISDKGIGNGISLIITLGMLASFPSVLGSIFNKLNLGSQDPSEFGIVSLLVLCAVF
VFVLMATVLIIEGVRKVPVQHARRIIGRREVLGGGSYLPLKVNYAGVIPVIFASSLLMFPATIGQFLSSESSWLKRIATM
LSPGSVVYSIFYVLLIIFFTYFWTATQFRPEQIASEMKKNGAFIPGIRQGKPTQSYLEYTMNRVTLLGAVFLAVVAILPS
ILGRILRVDANVSYFLGGTAMLIVVGVVLDTMKQIDAFLLVRRYDGVLKKDRPKGRR

Sequences:

>Translated_457_residues
MATLRQVFSISELRQKIFFTFSLLALCRIGVFIPVPGINGDRAVAYFNQLLGSSQNLFQLADIFSGGAFAQMTVIALGVV
PYISASIIVQLLVVFMPTLQREMREAPDQGKRKLGRMTRLFTLLLACVQSLLFAKFALRMNLVVPGIVLPAMLSLKLFGI
PCVFYLTTVVVMTTGTLLLMWIGEQISDKGIGNGISLIITLGMLASFPSVLGSIFNKLNLGSQDPSEFGIVSLLVLCAVF
VFVLMATVLIIEGVRKVPVQHARRIIGRREVLGGGSYLPLKVNYAGVIPVIFASSLLMFPATIGQFLSSESSWLKRIATM
LSPGSVVYSIFYVLLIIFFTYFWTATQFRPEQIASEMKKNGAFIPGIRQGKPTQSYLEYTMNRVTLLGAVFLAVVAILPS
ILGRILRVDANVSYFLGGTAMLIVVGVVLDTMKQIDAFLLVRRYDGVLKKDRPKGRR
>Mature_456_residues
ATLRQVFSISELRQKIFFTFSLLALCRIGVFIPVPGINGDRAVAYFNQLLGSSQNLFQLADIFSGGAFAQMTVIALGVVP
YISASIIVQLLVVFMPTLQREMREAPDQGKRKLGRMTRLFTLLLACVQSLLFAKFALRMNLVVPGIVLPAMLSLKLFGIP
CVFYLTTVVVMTTGTLLLMWIGEQISDKGIGNGISLIITLGMLASFPSVLGSIFNKLNLGSQDPSEFGIVSLLVLCAVFV
FVLMATVLIIEGVRKVPVQHARRIIGRREVLGGGSYLPLKVNYAGVIPVIFASSLLMFPATIGQFLSSESSWLKRIATML
SPGSVVYSIFYVLLIIFFTYFWTATQFRPEQIASEMKKNGAFIPGIRQGKPTQSYLEYTMNRVTLLGAVFLAVVAILPSI
LGRILRVDANVSYFLGGTAMLIVVGVVLDTMKQIDAFLLVRRYDGVLKKDRPKGRR

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family

Homologues:

Organism=Escherichia coli, GI1789696, Length=448, Percent_Identity=38.6160714285714, Blast_Score=272, Evalue=3e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECY_CHLMU (Q9PJN1)

Other databases:

- EMBL:   AE002160
- PIR:   E81663
- RefSeq:   NP_297170.1
- ProteinModelPortal:   Q9PJN1
- GeneID:   1246164
- GenomeReviews:   AE002160_GR
- KEGG:   cmu:TC0797
- TIGR:   TC_0797
- HOGENOM:   HBG565931
- OMA:   FAQSIMF
- ProtClustDB:   PRK09204
- BioCyc:   CMUR243161:TC_0797-MONOMER
- InterPro:   IPR002208
- InterPro:   IPR023201
- PANTHER:   PTHR10906
- PIRSF:   PIRSF004557
- PRINTS:   PR00303
- TIGRFAMs:   TIGR00967

Pfam domain/function: PF00344 SecY; SSF103491 SecY

EC number: NA

Molecular weight: Translated: 50266; Mature: 50135

Theoretical pI: Translated: 10.67; Mature: 10.67

Prosite motif: PS00755 SECY_1; PS00756 SECY_2; PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xd4a815c)-; HASH(0xd698e30)-; HASH(0xd698f20)-; HASH(0xc592360)-; HASH(0xb987ae4)-; HASH(0xd0c0bb8)-; HASH(0x95d6854)-; HASH(0xd9829b4)-; HASH(0xcc616d0)-; HASH(0xd9b0a38)-;

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCH
>Mature Secondary Structure 
ATLRQVFSISELRQKIFFTFSLLALCRIGVFIPVPGINGDRAVAYFNQLLGSSQNLFQL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHCCCCHHHHH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HHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10684935