| Definition | Chlamydia muridarum Nigg, complete genome. |
|---|---|
| Accession | NC_002620 |
| Length | 1,072,950 |
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The map label for this gene is polA
Identifier: 15835394
GI number: 15835394
Start: 921001
End: 923601
Strand: Reverse
Name: polA
Synonym: TC0780
Alternate gene names: 15835394
Gene position: 923601-921001 (Counterclockwise)
Preceding gene: 15835395
Following gene: 15835393
Centisome position: 86.08
GC content: 40.1
Gene sequence:
>2601_bases ATGAAAAAACTTTTTATTTTAGACGCTTCAGGATTTATTTTTAGGGCATATTTTGCTCTCCCAGAGATGCGAGGGCCGAA TGGGGGAAGTACACAGGCGGTATTTGGATTTATTCGTTCTTTAGATAAGTTAGTAAATGACCTTTCTCCAGAGTATATGG TTGCGGTATTCGATGGCCCGAATAATAAGCAGAGTCGTCAGGAGCTATATGCAGATTATAAAAGTAATCGAGATCGGAAA TTCGAAGATCTCCCAGAGCAAATTGCTTTAGTAAAGCAATATTGTGAGTTGATTGGAATCCCTTGTTTAGAAAAAGAAGG TGTAGAGGCTGATGATGTAATCGCTAGTGTTGCTAAAAAAGCTGTTGCTGAGGGTTTTGAAGTGTGTATTTGCACAGCGG ATAAGGACTTATTGCAATTAGTGAATAGTCAGGTCTCTGTTTTCAACCCATGGAAAGAACAGGAAATCAAATATAACGAA GTTTTATTACAATTCGGAGTCGCTCCTGATCAGATAGCTGATTATTTAGCTCTAGTTGGAGATTCTTCGGATAACATTCC TGGTGTTGTAGGTTGCGGACCTAAGAAAGCTCAGGCTTTTCTGAAAGAGTTTCAATCGGTAGAAGATTTAGTTGCCAATA CACAGCGTTTATCTAGCAAAAATAAACAAATGATAGAGGAGCAGATCGAGACGCTGCTTTTGAGTAAACGTCTTGCAACT CTTCATACAGATCTCATGATCCCTCTAAAAACAGAGGAGATGTCTTTTTCTTCGCAGACTGCTGATGTAGCGCAATTAAA TGCGTTTTATTTGCAGCATGGATTTAAGGCATTAGTTAAGCATGCTCCCACATCTGAAACCTCTATTTCTTTACAGGTTG TAAAAGACCCCTCTGTTTTACAGATGGTTTTAAAGAACTTAAAAGGGAGGGAAGTAGGGTATTGTGTTGCTTATACCGGG GAGCACTTGCCTTCGTTACGTCTACATGGCGTTGCTCTATCTGGAGGGGATGAAGTTTTTTACATAGAGATCTCTGGAGA TCAAGAGATTGCTTTGCTTAAAGCGTTTTTTGCGGATGCTACTACTAAATTTTTTGGATACCGTACTAAACGGGATAACC ATGCCTTAAAAAATCATGGGATTGATGTTCACGTAACTGCTGATTTAGTGTTAGCACAACATTTAGTTAATGGAGGAGCA AAAATTTCTTTCCAGACGCTCCTTGTTGAATCGGGTCATATTCAAGAAGCGGCATTTTTTGCAAAAGAATGGGGAGCAAG TTCTCTTCCTGTACAAAACCTTCCTCAGAATCCTGCACAATACTTTGGAATATTTGTTTCTCGGTTACCGTCTATCAAGA ATTATTTGTTTGAGAAGTTAGAAGAAAAAGGATTAAAAAGTATTTTTAAAAACGTCGAACAGCCATTAGAAGAGATTTTA TTTGCTATGGAATGCGCTGGGATGCCCTTAGATAGCGAGGGGTTACTGGTTTTGGACAGAGATTTGTCCAAAGAGCTCGA GACTTATACCCAAGAAATTTATGATTTGGCTGGGTGTGAGTTTAATATTAAATCTCCTAAGCAGTTATCGGATGTTTTGT ATCACCGGTTGGGAATAAAGCCTGTGGATAAAGCAAAATCTACCAAGGCTGAAGTATTAGAGGCTTTAGAGGGGAGCCAC GAGATCATTTCCAAAATTTTGGCTTTCCGTGCGACAGAAAAAATGTTGTCAACATATGTGAGAGCTTTGCCCAGGCAGAT AGACTTAGGAACACATCGGGTTCATCCGACGTTTAACCAAGTAGGAACGGTAACAGGAAGACTTTCCTGTCAGGATCCTA ATCTTCAAAATATTCCTGTTCGTTATGAAAGAGGCAAATCGCTTCGGGAGGCTTTTCGATTTACAAAAGAAAATGATTAT TTTTTAGCTGCTGATTATTCTCAGGTTGAGTTACGGTTTCTTGCTCATCTTAGCCAAGATGAGACGTTGAAGCGTGCTTT TGATTCTGGAGAAGATATTCATACTTTCACTGCTTCGCAGGTATTTAACGTTCCTTTGGACCAAGTGACAGAGAGACAAC GTTATCAGGCTAAAGCAGTTAATTTTGGCCTTGCGTACGGACAACAGGCATATGGATTGTCAAAAAATTTGAAGATTAGT GTGAATGAGGCTCAGGGGTTAATAGATGCCTATTTTGCTCGTTACCCTCAAGCTTCCGAGTTTATTACGCACACGATCGA GCAGGCTAGTAAAGAGCAGAAAGTGACAACGATGCTGGGGAGGGAGCGTATTTTGAGTGATTGGGAAAGCTCTCCTGGGG CACGAGCCGCTTCTGGTAGGCTTGCAGTTAATACGCGTATACAAGGTAGTGCAGCAGAACTAATTAAATTAGCTATGTTA AATATTTCTCGGGAATTAGTATCAAGAGGGCTAAAAAGTCGTTTATTACTGCAAATCCATGACGAGTTATTATTTGAAGT CCCAAAGGAAGAATTAGAGGAGATGAAAGTCCTTGTTCAAGAGAAGATGGAGTCCGCAATGTCGCTGTCTGTTCCTTTGG TTGTGAATGTCTTAATTGGAAAAAATTGGGCGGAATGCTAG
Upstream 100 bases:
>100_bases AGCAACAGTCCTCTTGTGACAGGTAAGCTTCAATTGGCTGTGTTGCCTGATCAACAACAAAAATCTCTGTGGTACATAGG TGAGTGACTAAAATAGCAAT
Downstream 100 bases:
>100_bases ATTTATTGAAGATTTCTGTTACAGGGGATCCCTCTTCGGGGAAAACTGAGGCGTGTCAGGTTTTTGAAGAATTGGGGGCT TTTGTAATTAGTGCTGATAA
Product: DNA polymerase I
Products: NA
Alternate protein names: POL I [H]
Number of amino acids: Translated: 866; Mature: 866
Protein sequence:
>866_residues MKKLFILDASGFIFRAYFALPEMRGPNGGSTQAVFGFIRSLDKLVNDLSPEYMVAVFDGPNNKQSRQELYADYKSNRDRK FEDLPEQIALVKQYCELIGIPCLEKEGVEADDVIASVAKKAVAEGFEVCICTADKDLLQLVNSQVSVFNPWKEQEIKYNE VLLQFGVAPDQIADYLALVGDSSDNIPGVVGCGPKKAQAFLKEFQSVEDLVANTQRLSSKNKQMIEEQIETLLLSKRLAT LHTDLMIPLKTEEMSFSSQTADVAQLNAFYLQHGFKALVKHAPTSETSISLQVVKDPSVLQMVLKNLKGREVGYCVAYTG EHLPSLRLHGVALSGGDEVFYIEISGDQEIALLKAFFADATTKFFGYRTKRDNHALKNHGIDVHVTADLVLAQHLVNGGA KISFQTLLVESGHIQEAAFFAKEWGASSLPVQNLPQNPAQYFGIFVSRLPSIKNYLFEKLEEKGLKSIFKNVEQPLEEIL FAMECAGMPLDSEGLLVLDRDLSKELETYTQEIYDLAGCEFNIKSPKQLSDVLYHRLGIKPVDKAKSTKAEVLEALEGSH EIISKILAFRATEKMLSTYVRALPRQIDLGTHRVHPTFNQVGTVTGRLSCQDPNLQNIPVRYERGKSLREAFRFTKENDY FLAADYSQVELRFLAHLSQDETLKRAFDSGEDIHTFTASQVFNVPLDQVTERQRYQAKAVNFGLAYGQQAYGLSKNLKIS VNEAQGLIDAYFARYPQASEFITHTIEQASKEQKVTTMLGRERILSDWESSPGARAASGRLAVNTRIQGSAAELIKLAML NISRELVSRGLKSRLLLQIHDELLFEVPKEELEEMKVLVQEKMESAMSLSVPLVVNVLIGKNWAEC
Sequences:
>Translated_866_residues MKKLFILDASGFIFRAYFALPEMRGPNGGSTQAVFGFIRSLDKLVNDLSPEYMVAVFDGPNNKQSRQELYADYKSNRDRK FEDLPEQIALVKQYCELIGIPCLEKEGVEADDVIASVAKKAVAEGFEVCICTADKDLLQLVNSQVSVFNPWKEQEIKYNE VLLQFGVAPDQIADYLALVGDSSDNIPGVVGCGPKKAQAFLKEFQSVEDLVANTQRLSSKNKQMIEEQIETLLLSKRLAT LHTDLMIPLKTEEMSFSSQTADVAQLNAFYLQHGFKALVKHAPTSETSISLQVVKDPSVLQMVLKNLKGREVGYCVAYTG EHLPSLRLHGVALSGGDEVFYIEISGDQEIALLKAFFADATTKFFGYRTKRDNHALKNHGIDVHVTADLVLAQHLVNGGA KISFQTLLVESGHIQEAAFFAKEWGASSLPVQNLPQNPAQYFGIFVSRLPSIKNYLFEKLEEKGLKSIFKNVEQPLEEIL FAMECAGMPLDSEGLLVLDRDLSKELETYTQEIYDLAGCEFNIKSPKQLSDVLYHRLGIKPVDKAKSTKAEVLEALEGSH EIISKILAFRATEKMLSTYVRALPRQIDLGTHRVHPTFNQVGTVTGRLSCQDPNLQNIPVRYERGKSLREAFRFTKENDY FLAADYSQVELRFLAHLSQDETLKRAFDSGEDIHTFTASQVFNVPLDQVTERQRYQAKAVNFGLAYGQQAYGLSKNLKIS VNEAQGLIDAYFARYPQASEFITHTIEQASKEQKVTTMLGRERILSDWESSPGARAASGRLAVNTRIQGSAAELIKLAML NISRELVSRGLKSRLLLQIHDELLFEVPKEELEEMKVLVQEKMESAMSLSVPLVVNVLIGKNWAEC >Mature_866_residues MKKLFILDASGFIFRAYFALPEMRGPNGGSTQAVFGFIRSLDKLVNDLSPEYMVAVFDGPNNKQSRQELYADYKSNRDRK FEDLPEQIALVKQYCELIGIPCLEKEGVEADDVIASVAKKAVAEGFEVCICTADKDLLQLVNSQVSVFNPWKEQEIKYNE VLLQFGVAPDQIADYLALVGDSSDNIPGVVGCGPKKAQAFLKEFQSVEDLVANTQRLSSKNKQMIEEQIETLLLSKRLAT LHTDLMIPLKTEEMSFSSQTADVAQLNAFYLQHGFKALVKHAPTSETSISLQVVKDPSVLQMVLKNLKGREVGYCVAYTG EHLPSLRLHGVALSGGDEVFYIEISGDQEIALLKAFFADATTKFFGYRTKRDNHALKNHGIDVHVTADLVLAQHLVNGGA KISFQTLLVESGHIQEAAFFAKEWGASSLPVQNLPQNPAQYFGIFVSRLPSIKNYLFEKLEEKGLKSIFKNVEQPLEEIL FAMECAGMPLDSEGLLVLDRDLSKELETYTQEIYDLAGCEFNIKSPKQLSDVLYHRLGIKPVDKAKSTKAEVLEALEGSH EIISKILAFRATEKMLSTYVRALPRQIDLGTHRVHPTFNQVGTVTGRLSCQDPNLQNIPVRYERGKSLREAFRFTKENDY FLAADYSQVELRFLAHLSQDETLKRAFDSGEDIHTFTASQVFNVPLDQVTERQRYQAKAVNFGLAYGQQAYGLSKNLKIS VNEAQGLIDAYFARYPQASEFITHTIEQASKEQKVTTMLGRERILSDWESSPGARAASGRLAVNTRIQGSAAELIKLAML NISRELVSRGLKSRLLLQIHDELLFEVPKEELEEMKVLVQEKMESAMSLSVPLVVNVLIGKNWAEC
Specific function: In addition to polymerase activity, this DNA polymerase exhibits 3' to 5' and 5' to 3' exonuclease activity [H]
COG id: COG0749
COG function: function code L; DNA polymerase I - 3'-5' exonuclease and polymerase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 5'-3' exonuclease domain [H]
Homologues:
Organism=Homo sapiens, GI112420958, Length=445, Percent_Identity=33.7078651685393, Blast_Score=212, Evalue=2e-54, Organism=Homo sapiens, GI139394648, Length=529, Percent_Identity=27.9773156899811, Blast_Score=187, Evalue=3e-47, Organism=Escherichia coli, GI1790294, Length=924, Percent_Identity=34.8484848484849, Blast_Score=459, Evalue=1e-130, Organism=Escherichia coli, GI226510970, Length=209, Percent_Identity=33.9712918660287, Blast_Score=127, Evalue=3e-30, Organism=Caenorhabditis elegans, GI86563272, Length=376, Percent_Identity=34.0425531914894, Blast_Score=191, Evalue=1e-48, Organism=Drosophila melanogaster, GI17933644, Length=422, Percent_Identity=31.5165876777251, Blast_Score=170, Evalue=3e-42,
Paralogues:
None
Copy number: 400 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002562 - InterPro: IPR020046 - InterPro: IPR020045 - InterPro: IPR002421 - InterPro: IPR020047 - InterPro: IPR019760 - InterPro: IPR001098 - InterPro: IPR018320 - InterPro: IPR002298 - InterPro: IPR008918 - InterPro: IPR003583 - InterPro: IPR012337 [H]
Pfam domain/function: PF01367 5_3_exonuc; PF02739 5_3_exonuc_N; PF00476 DNA_pol_A [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 96858; Mature: 96858
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLFILDASGFIFRAYFALPEMRGPNGGSTQAVFGFIRSLDKLVNDLSPEYMVAVFDGP CCEEEEEECCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECC NNKQSRQELYADYKSNRDRKFEDLPEQIALVKQYCELIGIPCLEKEGVEADDVIASVAKK CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH AVAEGFEVCICTADKDLLQLVNSQVSVFNPWKEQEIKYNEVLLQFGVAPDQIADYLALVG HHHCCCEEEEEECCHHHHHHHCCCHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHHHHHHC DSSDNIPGVVGCGPKKAQAFLKEFQSVEDLVANTQRLSSKNKQMIEEQIETLLLSKRLAT CCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LHTDLMIPLKTEEMSFSSQTADVAQLNAFYLQHGFKALVKHAPTSETSISLQVVKDPSVL HHHCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHH QMVLKNLKGREVGYCVAYTGEHLPSLRLHGVALSGGDEVFYIEISGDQEIALLKAFFADA HHHHHHCCCCCCEEEEEECCCCCCCCEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHH TTKFFGYRTKRDNHALKNHGIDVHVTADLVLAQHLVNGGAKISFQTLLVESGHIQEAAFF HHHHHCCCCCCCCCHHHHCCCEEEEHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHH AKEWGASSLPVQNLPQNPAQYFGIFVSRLPSIKNYLFEKLEEKGLKSIFKNVEQPLEEIL HHHCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FAMECAGMPLDSEGLLVLDRDLSKELETYTQEIYDLAGCEFNIKSPKQLSDVLYHRLGIK HHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCEECCCCHHHHHHHHHHHHCCC PVDKAKSTKAEVLEALEGSHEIISKILAFRATEKMLSTYVRALPRQIDLGTHRVHPTFNQ CCHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCHHH VGTVTGRLSCQDPNLQNIPVRYERGKSLREAFRFTKENDYFLAADYSQVELRFLAHLSQD HCCEEEEEEECCCCCCCCCCHHHCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCC ETLKRAFDSGEDIHTFTASQVFNVPLDQVTERQRYQAKAVNFGLAYGQQAYGLSKNLKIS HHHHHHHCCCCCEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCEEE VNEAQGLIDAYFARYPQASEFITHTIEQASKEQKVTTMLGRERILSDWESSPGARAASGR EHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC LAVNTRIQGSAAELIKLAMLNISRELVSRGLKSRLLLQIHDELLFEVPKEELEEMKVLVQ EEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH EKMESAMSLSVPLVVNVLIGKNWAEC HHHHHHHCCCHHHHHHHHHCCCCCCC >Mature Secondary Structure MKKLFILDASGFIFRAYFALPEMRGPNGGSTQAVFGFIRSLDKLVNDLSPEYMVAVFDGP CCEEEEEECCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECC NNKQSRQELYADYKSNRDRKFEDLPEQIALVKQYCELIGIPCLEKEGVEADDVIASVAKK CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH AVAEGFEVCICTADKDLLQLVNSQVSVFNPWKEQEIKYNEVLLQFGVAPDQIADYLALVG HHHCCCEEEEEECCHHHHHHHCCCHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHHHHHHC DSSDNIPGVVGCGPKKAQAFLKEFQSVEDLVANTQRLSSKNKQMIEEQIETLLLSKRLAT CCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LHTDLMIPLKTEEMSFSSQTADVAQLNAFYLQHGFKALVKHAPTSETSISLQVVKDPSVL HHHCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHH QMVLKNLKGREVGYCVAYTGEHLPSLRLHGVALSGGDEVFYIEISGDQEIALLKAFFADA HHHHHHCCCCCCEEEEEECCCCCCCCEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHH TTKFFGYRTKRDNHALKNHGIDVHVTADLVLAQHLVNGGAKISFQTLLVESGHIQEAAFF HHHHHCCCCCCCCCHHHHCCCEEEEHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHH AKEWGASSLPVQNLPQNPAQYFGIFVSRLPSIKNYLFEKLEEKGLKSIFKNVEQPLEEIL HHHCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FAMECAGMPLDSEGLLVLDRDLSKELETYTQEIYDLAGCEFNIKSPKQLSDVLYHRLGIK HHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCEECCCCHHHHHHHHHHHHCCC PVDKAKSTKAEVLEALEGSHEIISKILAFRATEKMLSTYVRALPRQIDLGTHRVHPTFNQ CCHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCHHH VGTVTGRLSCQDPNLQNIPVRYERGKSLREAFRFTKENDYFLAADYSQVELRFLAHLSQD HCCEEEEEEECCCCCCCCCCHHHCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCC ETLKRAFDSGEDIHTFTASQVFNVPLDQVTERQRYQAKAVNFGLAYGQQAYGLSKNLKIS HHHHHHHCCCCCEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCEEE VNEAQGLIDAYFARYPQASEFITHTIEQASKEQKVTTMLGRERILSDWESSPGARAASGR EHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC LAVNTRIQGSAAELIKLAMLNISRELVSRGLKSRLLLQIHDELLFEVPKEELEEMKVLVQ EEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH EKMESAMSLSVPLVVNVLIGKNWAEC HHHHHHHCCCHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]