| Definition | Chlamydia muridarum Nigg, complete genome. |
|---|---|
| Accession | NC_002620 |
| Length | 1,072,950 |
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The map label for this gene is pmpA
Identifier: 15835308
GI number: 15835308
Start: 825068
End: 828028
Strand: Direct
Name: pmpA
Synonym: TC0693
Alternate gene names: 15835308
Gene position: 825068-828028 (Clockwise)
Preceding gene: 15835307
Following gene: 15835309
Centisome position: 76.9
GC content: 39.55
Gene sequence:
>2961_bases GTGCCACAAGCGCTTATAATAAAGGAACTTATGAATCAAGTCATAAAAACCATTGCTCTTTGCTATCAAAAATATATCTC TAGAGCATCTAACAAAACCTTCTCAATACATAATACTCTTTCCCTATCTCTTCTTCCCAAGTGTCTACTTGGATCCCTAA TCATCTATACCTCACATGCATTTGGAGAAATGGAATTAGCCATTTCTGGGCATAAATATGGCAAAGACAGAGATGCTTTT ACTATGATCTCCTCATGCCCAGAAGGGACTAATTACATGATTAACCGTAAGCTCATTCTGAGCGAATTTTCTTCGCTAGA TAAATTCTCATCAGGAGGAGCTTTTAAGAATCTTGCAGGAAAAATAGCATTCTTAGGAAAACACTCCTCTTCCTCGATCC ACTTCAAACACCTCAACATTAACGGATTCGGATCCGGAATCTTTTCCGAATCTGCTATCGAATTTTCTGATTTACGCAAA CTTGTTGCTTTTGGCTCTGAAAGCACTGGAGGCATTTTTACAGCAAGAGATGACATCTCATTTAAAAATAATCACTACAT CGCTTTCCGCAACAATATAGCCAAAGGAAATGGCGGAGTAATTTTACTTCAAGGAGATGAAAGAGGAACTGTATCTTTTA CAGATCAACAAGGAGCTATTATTTTTGCCAATAACCAAGCTTTAGTCTCTCCATCTATAAAACATAGTGGGCGTGGAGGA GCTATTAGCGGAGACTTCGCTGGATCTCGAATTATTTTTCTCAATAATCAACAGATCACATTTGAAGAAAATAGTGCTGT TCACGGAGGAGCTATCTACAATAAAAATGGGGTGGTAGAATTTCTTGGCAATGGAGGCACTCTTTCTTTTAAAGAGAACA GCACAAGAGCCAATGGAGGTGCTATATACACTGGTAAATTCAAAGCAAATCAACAAACGGCTCCTATTATATTTTCACAA AATAACGCTAATCAAAAAGGCGGCGCTATTTACGCTCAATACGTTAACTTAGAACAAAATCAGGATGCTATTCGTTTTGA AAATAATTCTGCTAAAGAAGGCGGAGGAGCAATCAGCTCATCTCAATGCGCAATCACAGCCCACAATAGCATCACTTTTT CAAACAATTTTGCGGGAGATCTTGGAGGCGGAGCTATCCTATTAGGAGGGAAACAACCATCGCTATCCTTGGTCGCTCAC AATGGAAATATTGCATTTATTGGCAATACTATGCTTCCTGCAACAAAAAAGGCCTCTTTACCTCGAAATAATTCGATCTT AGTCAAAGAATCTCCCTATAAAATTCAATTCGCAGCGAATAAAAATCGCTCTATTATTTTCTTTGACCCAGTAATTGCTT TGTCACCTTCTACGTCTCCCGTAGAGATTAATTCTCCTGAACACGAAACGCCTTTCTTCTCTCCTAAAGGAACTATCGTT TTCTCTGGAGCTAATCTTATAGACGATGCCAAAGAGGATATTGCAAATAGAACTTCTATTTTCAATCAGCCTGTTCTTCT CCATAATGGAACCCTTTCTATTGAAAGCGGAGCTCATCTTGTTGTTCAAAGCTTCAAACAAACTGGTGGACGAATTAGCT TATCTCCAGGGTCCTCACTAGCTCTTTATACAACCAATACACTCTTTCATGGCAATGTTTCTAGCACAGACCCTTTGGAA ATTAATGGTTTAAGCCTTGGAGTAGATACTTCTCCTTCCAACCTTTATTCTGAAATCCGCGCAGGCAGCGCTCCTCTCAA ATTATCAGGGTCTCCAGATATTCATGATCCTGAAAGACTGTTTTATGAAAATCGGGATTCCGCAGCATCTCCATATCAAA TGGAAATTCTTTTATCCTCTGACAAAATCATTGATGTTTCTAACTTTACAATCGACGCTCCCGTACCAAATAAAGAAGCT GGGTTTCAAGGATCTTGGCACTTCAGCTGGCAGCCCAATACTGTCAATAACACTAAACACAAGGTATTGCGTGCTTCCTG GATCCCAACTGGCGAATATATCCTTGAACCAAGCCGTGTTGGAAATGCTATCCCTAATTCCTTATGGAGCACATTTTTAC TTTTGCAAACGGCTTCTCATAACTTAGGAGATCATTTATGCAATAACTCCGATCTAGTCCCTACTTCATACTTAGGGCTT TTAATTGGAGGAATTGGAGCAGAAATGCGCACTTATTCCGCAGAAAAAGAAAGTTTTATCTCCCGTTCAGGCACTACAGG AACCACCATTATACGCTTAACTCCAACCCTCACTCTATCGGGAGGTGCGACGCATATGTTCGGAGATTCCTTTGTTACAA AATTACCAGAATTCATTGCTTCTGAAGGAATGGTACAAAATGTTGGTCTTACCCAAATCTTAGGACCATTAACTGTAAAA TCCACATTATGTGCAGCCTTAGATCATAATGCTATGATTCGCCTATCCGCTCAAAAAAATCATACACGTGCAAAATGGGA CACTTTTGGAATACGTGGAACATTAGGTGCCTCTTATTCATTGCTAGACTATGAAAATATGGTACGTATTTTCACATTTG CTAATGTTGAAGCCACAAATGTTTTACAGAAATCATTTACGGAAACGGGATACAATCCAAGAAGTTTTGCAAGAACAAGA CTCACGAACATCGCAGTTCCGGTAGGGATTGGGTATGAATTCTGCTTAAGCAACCACTCTTTTGCTCTATTAGGGAAAGG ACATATTGGTTACTCTCGAGATATCAAACGAAAAAATCCAGTAACTTTTGCTCAATTAGCTATGAATAACTTCTCCTGGA CTGCTAATGGCTGCCAAGTCCCAACCTCAGCACATACAATAGCGAACCAACTAATCCTTCGCTATAAAGCCTGCTCCCTA TACGTAAATGCAGTAGCTACCAAACTAGAAAGCACATATCTCTCAAGCAGCTTATCTTGCGGAGGCTATGTTGGTTTCTA A
Upstream 100 bases:
>100_bases TCATATTTGAAGCTTCTTATTAATTCTATATCAATGACTTGCGACAAATTCTAGAGTCGATAGAAAAGGAGTTTTCCGTT TATAGTTCCTGTTCACAATC
Downstream 100 bases:
>100_bases TCTGACCTTAGGGATGCACAATTTTTAAAACCTCCACATCTTCATGGTAAATTAGGCAAGGAATACCTTGCCTAATTTAC TTTTCTGATTTATCTAACGC
Product: polymorphic membrane protein A family protein
Products: NA
Alternate protein names: Polymorphic membrane protein A [H]
Number of amino acids: Translated: 986; Mature: 985
Protein sequence:
>986_residues MPQALIIKELMNQVIKTIALCYQKYISRASNKTFSIHNTLSLSLLPKCLLGSLIIYTSHAFGEMELAISGHKYGKDRDAF TMISSCPEGTNYMINRKLILSEFSSLDKFSSGGAFKNLAGKIAFLGKHSSSSIHFKHLNINGFGSGIFSESAIEFSDLRK LVAFGSESTGGIFTARDDISFKNNHYIAFRNNIAKGNGGVILLQGDERGTVSFTDQQGAIIFANNQALVSPSIKHSGRGG AISGDFAGSRIIFLNNQQITFEENSAVHGGAIYNKNGVVEFLGNGGTLSFKENSTRANGGAIYTGKFKANQQTAPIIFSQ NNANQKGGAIYAQYVNLEQNQDAIRFENNSAKEGGGAISSSQCAITAHNSITFSNNFAGDLGGGAILLGGKQPSLSLVAH NGNIAFIGNTMLPATKKASLPRNNSILVKESPYKIQFAANKNRSIIFFDPVIALSPSTSPVEINSPEHETPFFSPKGTIV FSGANLIDDAKEDIANRTSIFNQPVLLHNGTLSIESGAHLVVQSFKQTGGRISLSPGSSLALYTTNTLFHGNVSSTDPLE INGLSLGVDTSPSNLYSEIRAGSAPLKLSGSPDIHDPERLFYENRDSAASPYQMEILLSSDKIIDVSNFTIDAPVPNKEA GFQGSWHFSWQPNTVNNTKHKVLRASWIPTGEYILEPSRVGNAIPNSLWSTFLLLQTASHNLGDHLCNNSDLVPTSYLGL LIGGIGAEMRTYSAEKESFISRSGTTGTTIIRLTPTLTLSGGATHMFGDSFVTKLPEFIASEGMVQNVGLTQILGPLTVK STLCAALDHNAMIRLSAQKNHTRAKWDTFGIRGTLGASYSLLDYENMVRIFTFANVEATNVLQKSFTETGYNPRSFARTR LTNIAVPVGIGYEFCLSNHSFALLGKGHIGYSRDIKRKNPVTFAQLAMNNFSWTANGCQVPTSAHTIANQLILRYKACSL YVNAVATKLESTYLSSSLSCGGYVGF
Sequences:
>Translated_986_residues MPQALIIKELMNQVIKTIALCYQKYISRASNKTFSIHNTLSLSLLPKCLLGSLIIYTSHAFGEMELAISGHKYGKDRDAF TMISSCPEGTNYMINRKLILSEFSSLDKFSSGGAFKNLAGKIAFLGKHSSSSIHFKHLNINGFGSGIFSESAIEFSDLRK LVAFGSESTGGIFTARDDISFKNNHYIAFRNNIAKGNGGVILLQGDERGTVSFTDQQGAIIFANNQALVSPSIKHSGRGG AISGDFAGSRIIFLNNQQITFEENSAVHGGAIYNKNGVVEFLGNGGTLSFKENSTRANGGAIYTGKFKANQQTAPIIFSQ NNANQKGGAIYAQYVNLEQNQDAIRFENNSAKEGGGAISSSQCAITAHNSITFSNNFAGDLGGGAILLGGKQPSLSLVAH NGNIAFIGNTMLPATKKASLPRNNSILVKESPYKIQFAANKNRSIIFFDPVIALSPSTSPVEINSPEHETPFFSPKGTIV FSGANLIDDAKEDIANRTSIFNQPVLLHNGTLSIESGAHLVVQSFKQTGGRISLSPGSSLALYTTNTLFHGNVSSTDPLE INGLSLGVDTSPSNLYSEIRAGSAPLKLSGSPDIHDPERLFYENRDSAASPYQMEILLSSDKIIDVSNFTIDAPVPNKEA GFQGSWHFSWQPNTVNNTKHKVLRASWIPTGEYILEPSRVGNAIPNSLWSTFLLLQTASHNLGDHLCNNSDLVPTSYLGL LIGGIGAEMRTYSAEKESFISRSGTTGTTIIRLTPTLTLSGGATHMFGDSFVTKLPEFIASEGMVQNVGLTQILGPLTVK STLCAALDHNAMIRLSAQKNHTRAKWDTFGIRGTLGASYSLLDYENMVRIFTFANVEATNVLQKSFTETGYNPRSFARTR LTNIAVPVGIGYEFCLSNHSFALLGKGHIGYSRDIKRKNPVTFAQLAMNNFSWTANGCQVPTSAHTIANQLILRYKACSL YVNAVATKLESTYLSSSLSCGGYVGF >Mature_985_residues PQALIIKELMNQVIKTIALCYQKYISRASNKTFSIHNTLSLSLLPKCLLGSLIIYTSHAFGEMELAISGHKYGKDRDAFT MISSCPEGTNYMINRKLILSEFSSLDKFSSGGAFKNLAGKIAFLGKHSSSSIHFKHLNINGFGSGIFSESAIEFSDLRKL VAFGSESTGGIFTARDDISFKNNHYIAFRNNIAKGNGGVILLQGDERGTVSFTDQQGAIIFANNQALVSPSIKHSGRGGA ISGDFAGSRIIFLNNQQITFEENSAVHGGAIYNKNGVVEFLGNGGTLSFKENSTRANGGAIYTGKFKANQQTAPIIFSQN NANQKGGAIYAQYVNLEQNQDAIRFENNSAKEGGGAISSSQCAITAHNSITFSNNFAGDLGGGAILLGGKQPSLSLVAHN GNIAFIGNTMLPATKKASLPRNNSILVKESPYKIQFAANKNRSIIFFDPVIALSPSTSPVEINSPEHETPFFSPKGTIVF SGANLIDDAKEDIANRTSIFNQPVLLHNGTLSIESGAHLVVQSFKQTGGRISLSPGSSLALYTTNTLFHGNVSSTDPLEI NGLSLGVDTSPSNLYSEIRAGSAPLKLSGSPDIHDPERLFYENRDSAASPYQMEILLSSDKIIDVSNFTIDAPVPNKEAG FQGSWHFSWQPNTVNNTKHKVLRASWIPTGEYILEPSRVGNAIPNSLWSTFLLLQTASHNLGDHLCNNSDLVPTSYLGLL IGGIGAEMRTYSAEKESFISRSGTTGTTIIRLTPTLTLSGGATHMFGDSFVTKLPEFIASEGMVQNVGLTQILGPLTVKS TLCAALDHNAMIRLSAQKNHTRAKWDTFGIRGTLGASYSLLDYENMVRIFTFANVEATNVLQKSFTETGYNPRSFARTRL TNIAVPVGIGYEFCLSNHSFALLGKGHIGYSRDIKRKNPVTFAQLAMNNFSWTANGCQVPTSAHTIANQLILRYKACSLY VNAVATKLESTYLSSSLSCGGYVGF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted, cell wall. Cell outer membrane; Peripheral membrane protein; Extracellular side (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005546 - InterPro: IPR003368 - InterPro: IPR011427 [H]
Pfam domain/function: PF03797 Autotransporter; PF02415 Chlam_PMP; PF07548 ChlamPMP_M [H]
EC number: NA
Molecular weight: Translated: 106307; Mature: 106176
Theoretical pI: Translated: 9.00; Mature: 9.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQALIIKELMNQVIKTIALCYQKYISRASNKTFSIHNTLSLSLLPKCLLGSLIIYTSHA CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECEEEHHHHHHHHHCCEEEEECCC FGEMELAISGHKYGKDRDAFTMISSCPEGTNYMINRKLILSEFSSLDKFSSGGAFKNLAG CCEEEEEEECCCCCCCCCHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCHHHCCC KIAFLGKHSSSSIHFKHLNINGFGSGIFSESAIEFSDLRKLVAFGSESTGGIFTARDDIS EEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCC FKNNHYIAFRNNIAKGNGGVILLQGDERGTVSFTDQQGAIIFANNQALVSPSIKHSGRGG CCCCEEEEEECCCCCCCCCEEEEECCCCCEEEEECCCCEEEEECCCEEECCCCCCCCCCC AISGDFAGSRIIFLNNQQITFEENSAVHGGAIYNKNGVVEFLGNGGTLSFKENSTRANGG CEECCCCCCEEEEECCCEEEEECCCCEECCEEECCCCEEEEECCCCEEEEECCCCCCCCC AIYTGKFKANQQTAPIIFSQNNANQKGGAIYAQYVNLEQNQDAIRFENNSAKEGGGAISS EEEEEEEECCCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCCCCC SQCAITAHNSITFSNNFAGDLGGGAILLGGKQPSLSLVAHNGNIAFIGNTMLPATKKASL CCEEEEECCEEEECCCCCCCCCCCEEEECCCCCCEEEEEECCCEEEEECCCCCCCCCCCC PRNNSILVKESPYKIQFAANKNRSIIFFDPVIALSPSTSPVEINSPEHETPFFSPKGTIV CCCCEEEEECCCEEEEEEECCCCEEEEECCEEEECCCCCCEEECCCCCCCCCCCCCCCEE FSGANLIDDAKEDIANRTSIFNQPVLLHNGTLSIESGAHLVVQSFKQTGGRISLSPGSSL ECCCCHHHHHHHHHHHHHHHCCCCEEEECCEEEECCCCHHHHHHHHHCCCEEEECCCCEE ALYTTNTLFHGNVSSTDPLEINGLSLGVDTSPSNLYSEIRAGSAPLKLSGSPDIHDPERL EEEEEEEEEECCCCCCCCEEECCEEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCHHH FYENRDSAASPYQMEILLSSDKIIDVSNFTIDAPVPNKEAGFQGSWHFSWQPNTVNNTKH HCCCCCCCCCCEEEEEEECCCCEEEECCEEEECCCCCCCCCCCCEEEEEECCCCCCCCHH KVLRASWIPTGEYILEPSRVGNAIPNSLWSTFLLLQTASHNLGDHLCNNSDLVPTSYLGL EEEEEECCCCCCEEECHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHH LIGGIGAEMRTYSAEKESFISRSGTTGTTIIRLTPTLTLSGGATHMFGDSFVTKLPEFIA HHHCCCCHHHHCCCHHHHHHHCCCCCCEEEEEEEEEEEECCCCCEECCCHHHHHHHHHHH SEGMVQNVGLTQILGPLTVKSTLCAALDHNAMIRLSAQKNHTRAKWDTFGIRGTLGASYS CCCCEECCCHHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEECCCEECCCCCEE LLDYENMVRIFTFANVEATNVLQKSFTETGYNPRSFARTRLTNIAVPVGIGYEFCLSNHS EECCCCEEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHEEEEEECCCEEEEECCCC FALLGKGHIGYSRDIKRKNPVTFAQLAMNNFSWTANGCQVPTSAHTIANQLILRYKACSL EEEEECCCCCCCCCCCCCCCCEEEEEHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHH YVNAVATKLESTYLSSSLSCGGYVGF HHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure PQALIIKELMNQVIKTIALCYQKYISRASNKTFSIHNTLSLSLLPKCLLGSLIIYTSHA CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECEEEHHHHHHHHHCCEEEEECCC FGEMELAISGHKYGKDRDAFTMISSCPEGTNYMINRKLILSEFSSLDKFSSGGAFKNLAG CCEEEEEEECCCCCCCCCHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCHHHCCC KIAFLGKHSSSSIHFKHLNINGFGSGIFSESAIEFSDLRKLVAFGSESTGGIFTARDDIS EEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCC FKNNHYIAFRNNIAKGNGGVILLQGDERGTVSFTDQQGAIIFANNQALVSPSIKHSGRGG CCCCEEEEEECCCCCCCCCEEEEECCCCCEEEEECCCCEEEEECCCEEECCCCCCCCCCC AISGDFAGSRIIFLNNQQITFEENSAVHGGAIYNKNGVVEFLGNGGTLSFKENSTRANGG CEECCCCCCEEEEECCCEEEEECCCCEECCEEECCCCEEEEECCCCEEEEECCCCCCCCC AIYTGKFKANQQTAPIIFSQNNANQKGGAIYAQYVNLEQNQDAIRFENNSAKEGGGAISS EEEEEEEECCCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCCCCC SQCAITAHNSITFSNNFAGDLGGGAILLGGKQPSLSLVAHNGNIAFIGNTMLPATKKASL CCEEEEECCEEEECCCCCCCCCCCEEEECCCCCCEEEEEECCCEEEEECCCCCCCCCCCC PRNNSILVKESPYKIQFAANKNRSIIFFDPVIALSPSTSPVEINSPEHETPFFSPKGTIV CCCCEEEEECCCEEEEEEECCCCEEEEECCEEEECCCCCCEEECCCCCCCCCCCCCCCEE FSGANLIDDAKEDIANRTSIFNQPVLLHNGTLSIESGAHLVVQSFKQTGGRISLSPGSSL ECCCCHHHHHHHHHHHHHHHCCCCEEEECCEEEECCCCHHHHHHHHHCCCEEEECCCCEE ALYTTNTLFHGNVSSTDPLEINGLSLGVDTSPSNLYSEIRAGSAPLKLSGSPDIHDPERL EEEEEEEEEECCCCCCCCEEECCEEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCHHH FYENRDSAASPYQMEILLSSDKIIDVSNFTIDAPVPNKEAGFQGSWHFSWQPNTVNNTKH HCCCCCCCCCCEEEEEEECCCCEEEECCEEEECCCCCCCCCCCCEEEEEECCCCCCCCHH KVLRASWIPTGEYILEPSRVGNAIPNSLWSTFLLLQTASHNLGDHLCNNSDLVPTSYLGL EEEEEECCCCCCEEECHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHH LIGGIGAEMRTYSAEKESFISRSGTTGTTIIRLTPTLTLSGGATHMFGDSFVTKLPEFIA HHHCCCCHHHHCCCHHHHHHHCCCCCCEEEEEEEEEEEECCCCCEECCCHHHHHHHHHHH SEGMVQNVGLTQILGPLTVKSTLCAALDHNAMIRLSAQKNHTRAKWDTFGIRGTLGASYS CCCCEECCCHHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEECCCEECCCCCEE LLDYENMVRIFTFANVEATNVLQKSFTETGYNPRSFARTRLTNIAVPVGIGYEFCLSNHS EECCCCEEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHEEEEEECCCEEEEECCCC FALLGKGHIGYSRDIKRKNPVTFAQLAMNNFSWTANGCQVPTSAHTIANQLILRYKACSL EEEEECCCCCCCCCCCCCCCCEEEEEHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHH YVNAVATKLESTYLSSSLSCGGYVGF HHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10684935 [H]