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Identifier: 15835298

GI number: 15835298

Start: 816204

End: 817001

Strand: Reverse

Name: Not Available

Synonym: TC0683

Alternate gene names: 15835298

Gene position: 817001-816204 (Counterclockwise)

Preceding gene: 15835299

Following gene: 15835297

Centisome position: 76.15

GC content: 41.35

Gene sequence:

>798_bases
ATGGAGTTTATAGGAAAAAATAATGCTCGTGTTAAAGCGGCTCTTGCTTTAAAGCGACAGCGAGCACGTAATAGTTCATA
CTTTTTATTAGAAGGGTTCCGCGAGATTCACCGGGCCTTGATTTCCGGGTACCATTGTTTACATGTGTTTTGCGGAGAAT
TGATATCTGATAAGGAGCGGGATCTTGATAAAGAGCTAACTGCTCTTGGCATCGAAAAATTACCTTGTCCTAAAGAGATA
TTAGAGAGGCTCTCTTTTAAGGAGCATCCGGATAATTTCATTGCTGTTTTTGAAAAAAAACGGCTCTCTTGCCAAGAGTT
TTTGAGATTACAGCGCAAGAATCAGCAACCCTTTTATTTGATTGTTGAGCAAGCAGAAAAACCAGGGAATATTGGGGCAT
TGTTGAGAATTGCTGATGGAGCTGGAGTCGATGGAGTCATTCTTTGTGATCCCGTAGTGGATTTATATAATCCTAATGTC
ATTCGCTCCTCCTTAGGCGCTGTGTTCACAGTACCTATTTGGCAGGCCTCTTTGGAGGAAGTTTTGGCTCTAGTTCGTGA
ACAAGAGTGGAAAATTTTTACCACTACTCCATCTACTCAAACTTTTTATTTTGATCAAAATTTTTGCCAACCATTGGCTG
TGGTGTTTGGCTCAGAAAAGGATGGACTTTCCCCCTCTTGGTTAGATGGAAGTTTTTGTAACATCGCTTTGCCTATGCTA
GGGAAAGCGGATTCATTGAACCTCTCTTCTTCTGTTGCAGCAGTTGCTTATGAGGTTGTGCGTCAAAGAAGTAGATGA

Upstream 100 bases:

>100_bases
CTAAAAGGGCGCTTCCTATGCTTTCTTCCCAAAAATGGCGGTTGGGAGAGAATTTTTGTGGTGAGGGAGATCAACGGTTG
CCTTCGGGAGTTTTTGCGCA

Downstream 100 bases:

>100_bases
CACTATTGTCATAAAAATTTTTTGGCGTTCTGGCTTAAAACTTGATTTTTAATGTTTTATATGTAATTCTGTAGGGTATC
TTCATTTGGAAGGGCTGTTT

Product: spoU rRNA methylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MEFIGKNNARVKAALALKRQRARNSSYFLLEGFREIHRALISGYHCLHVFCGELISDKERDLDKELTALGIEKLPCPKEI
LERLSFKEHPDNFIAVFEKKRLSCQEFLRLQRKNQQPFYLIVEQAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNV
IRSSLGAVFTVPIWQASLEEVLALVREQEWKIFTTTPSTQTFYFDQNFCQPLAVVFGSEKDGLSPSWLDGSFCNIALPML
GKADSLNLSSSVAAVAYEVVRQRSR

Sequences:

>Translated_265_residues
MEFIGKNNARVKAALALKRQRARNSSYFLLEGFREIHRALISGYHCLHVFCGELISDKERDLDKELTALGIEKLPCPKEI
LERLSFKEHPDNFIAVFEKKRLSCQEFLRLQRKNQQPFYLIVEQAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNV
IRSSLGAVFTVPIWQASLEEVLALVREQEWKIFTTTPSTQTFYFDQNFCQPLAVVFGSEKDGLSPSWLDGSFCNIALPML
GKADSLNLSSSVAAVAYEVVRQRSR
>Mature_265_residues
MEFIGKNNARVKAALALKRQRARNSSYFLLEGFREIHRALISGYHCLHVFCGELISDKERDLDKELTALGIEKLPCPKEI
LERLSFKEHPDNFIAVFEKKRLSCQEFLRLQRKNQQPFYLIVEQAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNV
IRSSLGAVFTVPIWQASLEEVLALVREQEWKIFTTTPSTQTFYFDQNFCQPLAVVFGSEKDGLSPSWLDGSFCNIALPML
GKADSLNLSSSVAAVAYEVVRQRSR

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=146, Percent_Identity=32.1917808219178, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1790623, Length=153, Percent_Identity=33.3333333333333, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 29856; Mature: 29856

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFIGKNNARVKAALALKRQRARNSSYFLLEGFREIHRALISGYHCLHVFCGELISDKER
CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHH
DLDKELTALGIEKLPCPKEILERLSFKEHPDNFIAVFEKKRLSCQEFLRLQRKNQQPFYL
HHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHEEHHHHHCCCHHHHHHHHHCCCCCEEE
IVEQAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLGAVFTVPIWQASLEE
EEECCCCCCCCEEEEEEECCCCCCCEEEECCHHHHCCCHHHHHHCCCEEEEHHHHHHHHH
VLALVREQEWKIFTTTPSTQTFYFDQNFCQPLAVVFGSEKDGLSPSWLDGSFCNIALPML
HHHHHHCCCCEEEEECCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCC
GKADSLNLSSSVAAVAYEVVRQRSR
CCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEFIGKNNARVKAALALKRQRARNSSYFLLEGFREIHRALISGYHCLHVFCGELISDKER
CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHH
DLDKELTALGIEKLPCPKEILERLSFKEHPDNFIAVFEKKRLSCQEFLRLQRKNQQPFYL
HHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHEEHHHHHCCCHHHHHHHHHCCCCCEEE
IVEQAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLGAVFTVPIWQASLEE
EEECCCCCCCCEEEEEEECCCCCCCEEEECCHHHHCCCHHHHHHCCCEEEEHHHHHHHHH
VLALVREQEWKIFTTTPSTQTFYFDQNFCQPLAVVFGSEKDGLSPSWLDGSFCNIALPML
HHHHHHCCCCEEEEECCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCC
GKADSLNLSSSVAAVAYEVVRQRSR
CCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]