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The map label for this gene is sod

Identifier: 15835184

GI number: 15835184

Start: 677490

End: 678113

Strand: Reverse

Name: sod

Synonym: TC0567

Alternate gene names: 15835184

Gene position: 678113-677490 (Counterclockwise)

Preceding gene: 15835185

Following gene: 15835183

Centisome position: 63.2

GC content: 39.42

Gene sequence:

>624_bases
ATGGCTATGGTTTTTTCTTCTTATAAGCTTCCCGATTTACCTTATGATTACGATGCTTTGGAACCTGTAATTAGCGCGGA
GATTATGCATCTCCACCATCAAAAACATCATCAAGGATATATAAATAATTTGAATGAAGCTTTGAAAAGCTTGGATGTAG
CAAGTGCTACTCAGGATCTCACGGGATTAATCGCAATTAACCCAGCTTTGCGTTTCAATGGCGGGGGGCATATTAATCAT
TCATTGTTTTGGGAAATGCTAGCGCCACAAAACAAAGGCGGAGGGACTCCACCTCGTCATGAGTTGCTTAAGTTAATAGA
AAAATTTTGGGGCTCTTTCGACAATTTTTTAAAAAATTTTATTAGTTCTTCTGCTGCCGTACAGGGATCCGGCTGGGGTT
GGTTGGCTTTTTGTCCCAAAAAACAAGAGCTTATGATACAGACCACAGCAAACCAAGATCCTCTAGAGGCTACAACGGGG
ATGATACCTCTCCTCGGAGTAGATGTGTGGGAGCATGCGTACTATCTCCAGTATAAAAATGCAAGATTGGATTATTTAAA
GAATTTTCCAAGTATAATTAACTGGGATTATATAGAGAGTCGTTTTGTAGAAATGAGTAAGTAA

Upstream 100 bases:

>100_bases
TCTTGACAGTGAATATTTTATTGGTGTTCTATAGGGATTCGTCTGTTTAGCTTGCTAGCAGAATAAGCTGGATAGTGGGA
TAGAAACTTTATTTTTTAGG

Downstream 100 bases:

>100_bases
TAATTTTATTATTGATTGGTTAAGAAGAATTAAAATAAAATTATTGCTCAATTTTTTGTAAAGAGGATGGTTTGTGCGTT
TATTTTCTTATGATAAACCA

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MAMVFSSYKLPDLPYDYDALEPVISAEIMHLHHQKHHQGYINNLNEALKSLDVASATQDLTGLIAINPALRFNGGGHINH
SLFWEMLAPQNKGGGTPPRHELLKLIEKFWGSFDNFLKNFISSSAAVQGSGWGWLAFCPKKQELMIQTTANQDPLEATTG
MIPLLGVDVWEHAYYLQYKNARLDYLKNFPSIINWDYIESRFVEMSK

Sequences:

>Translated_207_residues
MAMVFSSYKLPDLPYDYDALEPVISAEIMHLHHQKHHQGYINNLNEALKSLDVASATQDLTGLIAINPALRFNGGGHINH
SLFWEMLAPQNKGGGTPPRHELLKLIEKFWGSFDNFLKNFISSSAAVQGSGWGWLAFCPKKQELMIQTTANQDPLEATTG
MIPLLGVDVWEHAYYLQYKNARLDYLKNFPSIINWDYIESRFVEMSK
>Mature_206_residues
AMVFSSYKLPDLPYDYDALEPVISAEIMHLHHQKHHQGYINNLNEALKSLDVASATQDLTGLIAINPALRFNGGGHINHS
LFWEMLAPQNKGGGTPPRHELLKLIEKFWGSFDNFLKNFISSSAAVQGSGWGWLAFCPKKQELMIQTTANQDPLEATTGM
IPLLGVDVWEHAYYLQYKNARLDYLKNFPSIINWDYIESRFVEMSK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=200, Percent_Identity=55.5, Blast_Score=236, Evalue=1e-62,
Organism=Homo sapiens, GI67782305, Length=200, Percent_Identity=55.5, Blast_Score=236, Evalue=1e-62,
Organism=Homo sapiens, GI67782309, Length=201, Percent_Identity=43.7810945273632, Blast_Score=170, Evalue=7e-43,
Organism=Escherichia coli, GI1790342, Length=209, Percent_Identity=45.933014354067, Blast_Score=166, Evalue=7e-43,
Organism=Escherichia coli, GI1787946, Length=193, Percent_Identity=39.8963730569948, Blast_Score=137, Evalue=5e-34,
Organism=Caenorhabditis elegans, GI17506561, Length=207, Percent_Identity=56.5217391304348, Blast_Score=240, Evalue=3e-64,
Organism=Caenorhabditis elegans, GI17569479, Length=200, Percent_Identity=56.5, Blast_Score=224, Evalue=2e-59,
Organism=Saccharomyces cerevisiae, GI6321796, Length=201, Percent_Identity=41.7910447761194, Blast_Score=163, Evalue=2e-41,
Organism=Drosophila melanogaster, GI17136812, Length=204, Percent_Identity=55.3921568627451, Blast_Score=235, Evalue=1e-62,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 23514; Mature: 23383

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMVFSSYKLPDLPYDYDALEPVISAEIMHLHHQKHHQGYINNLNEALKSLDVASATQDL
CCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGLIAINPALRFNGGGHINHSLFWEMLAPQNKGGGTPPRHELLKLIEKFWGSFDNFLKNF
EEEEEECCEEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHH
ISSSAAVQGSGWGWLAFCPKKQELMIQTTANQDPLEATTGMIPLLGVDVWEHAYYLQYKN
HCCCCEECCCCCEEEEECCCCCEEEEEECCCCCCCHHHHCCHHHHHHHHHHHEEEEEECC
ARLDYLKNFPSIINWDYIESRFVEMSK
CHHHHHHCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
AMVFSSYKLPDLPYDYDALEPVISAEIMHLHHQKHHQGYINNLNEALKSLDVASATQDL
CEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGLIAINPALRFNGGGHINHSLFWEMLAPQNKGGGTPPRHELLKLIEKFWGSFDNFLKNF
EEEEEECCEEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHH
ISSSAAVQGSGWGWLAFCPKKQELMIQTTANQDPLEATTGMIPLLGVDVWEHAYYLQYKN
HCCCCEECCCCCEEEEECCCCCEEEEEECCCCCCCHHHHCCHHHHHHHHHHHEEEEEECC
ARLDYLKNFPSIINWDYIESRFVEMSK
CHHHHHHCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9784136 [H]