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The map label for this gene is sctU

Identifier: 15834985

GI number: 15834985

Start: 426526

End: 427608

Strand: Reverse

Name: sctU

Synonym: TC0366

Alternate gene names: 15834985

Gene position: 427608-426526 (Counterclockwise)

Preceding gene: 15834987

Following gene: 15834984

Centisome position: 39.85

GC content: 38.04

Gene sequence:

>1083_bases
ATGGGCGAAAAAACAGAAAAGGCGACCCCCAAGCGTCTTCGAGATGCTAGAAAAAAGGGGCAGGTAGCCAAATCTCAAGA
TTTTCCTTCTGCGATTACGTTCATAGTGTCCATGTTCATGACGTTTTCTCTGTCTTCATTTTTTGCTGAACATTTAGGAG
GGTTCTTAGTATCCATTTTCCGAACGGCTCCCCAACAACATGATCCTCGCCTTGCCGTTTATTATTTGAAAAACTGCTTA
ATGCTAATTCTTACAGTCTCACTTCCTCTACTAGGAGCAGTAGGCTTTGTAGGATTATTAATAGGATTTTTAGTTGTTGG
TCCTACTTTCTCCACAGAAGTTTTCAAACCAGATTTAAAAAAATTCAATCCGATTGAAAACCTTAAACAAAAATTCAAAT
TAAAAACGTTTATTGAATTACTTAAATCTATTTTTAAAATCTCTGGAGCAGCATTAATTCTCTATATTGTTCTAAAAAAT
CGTGTAGAACTTGTTATTGAAACAGCTGGTGTTCCCCCTTTAGTTACAGCGCAAATATTCAAAGAGATTTTATACAAGGC
TGTTACTTCCATTGGCATGTTTTTCCTTGTTGTTGCGGTAATAGACCTTGTGTATCAACGACACAGTTTTGCTAAAGAAC
TGAAGATGGAAAAGTTCGAAGTTAAACAGGAATTCAAAGATACAGAAGGGAACCCAGAAATTAAGGGGCGCCGTCGTCAA
ATTGCGCAAGAAATTGCCTATGAAGACACTTCCTCTCAAATTAAACATGCGAGCGCTGTCGTATCTAACCCTAAGGATAT
AGCCGTTGCCATCGGTTATATGCCTGAAAAATACAAAGCTCCATGGATTATAGCCATGGGAGTAAACTTAAGAGCACGAA
GAATTATTGCGGAAGCTGAGAAGTATGGAGTTCCCATAATGCGGAACGTCCCCTTAGCACACCAGCTTTTAGATGAAGGA
AAAGAGTTGAAGTTTATTCCTGAGACCACATATGAAGCGGTTGGGGAAATCCTTCTTTACATTACTTCTCTTAATGCGCA
AAACATTGAGAATAAAAACATTAACCAATTCGATAATCTGTAA

Upstream 100 bases:

>100_bases
ATAAAAGAGATGAGCTTCAATCACCTTCTTTCTTGAGAAAAACATTTACATAGGGTAACTTGCGAAATATTCCTTTTAGC
GCTTAAGCAACTGGCCACCT

Downstream 100 bases:

>100_bases
TGAACAAGCTACTCAATTTTGTCAGTAGAACATTCGGGGGAGACGCGGCCCTGAACATGATAAACAAGTCCAGCGACCTC
ATCCTTGCTATGTGGATGTT

Product: type III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MGEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFMTFSLSSFFAEHLGGFLVSIFRTAPQQHDPRLAVYYLKNCL
MLILTVSLPLLGAVGFVGLLIGFLVVGPTFSTEVFKPDLKKFNPIENLKQKFKLKTFIELLKSIFKISGAALILYIVLKN
RVELVIETAGVPPLVTAQIFKEILYKAVTSIGMFFLVVAVIDLVYQRHSFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQ
IAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGVNLRARRIIAEAEKYGVPIMRNVPLAHQLLDEG
KELKFIPETTYEAVGEILLYITSLNAQNIENKNINQFDNL

Sequences:

>Translated_360_residues
MGEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFMTFSLSSFFAEHLGGFLVSIFRTAPQQHDPRLAVYYLKNCL
MLILTVSLPLLGAVGFVGLLIGFLVVGPTFSTEVFKPDLKKFNPIENLKQKFKLKTFIELLKSIFKISGAALILYIVLKN
RVELVIETAGVPPLVTAQIFKEILYKAVTSIGMFFLVVAVIDLVYQRHSFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQ
IAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGVNLRARRIIAEAEKYGVPIMRNVPLAHQLLDEG
KELKFIPETTYEAVGEILLYITSLNAQNIENKNINQFDNL
>Mature_359_residues
GEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFMTFSLSSFFAEHLGGFLVSIFRTAPQQHDPRLAVYYLKNCLM
LILTVSLPLLGAVGFVGLLIGFLVVGPTFSTEVFKPDLKKFNPIENLKQKFKLKTFIELLKSIFKISGAALILYIVLKNR
VELVIETAGVPPLVTAQIFKEILYKAVTSIGMFFLVVAVIDLVYQRHSFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQI
AQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGVNLRARRIIAEAEKYGVPIMRNVPLAHQLLDEGK
ELKFIPETTYEAVGEILLYITSLNAQNIENKNINQFDNL

Specific function: Component of the yop secretion machinery [H]

COG id: COG1377

COG function: function code NU; Flagellar biosynthesis pathway, component FlhB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the type III secretion exporter family [H]

Homologues:

Organism=Escherichia coli, GI1788188, Length=354, Percent_Identity=28.5310734463277, Blast_Score=128, Evalue=5e-31,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006135
- InterPro:   IPR006307 [H]

Pfam domain/function: PF01312 Bac_export_2 [H]

EC number: NA

Molecular weight: Translated: 40596; Mature: 40465

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFMTFSLSSFFAEHLGGFLVSIF
CCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RTAPQQHDPRLAVYYLKNCLMLILTVSLPLLGAVGFVGLLIGFLVVGPTFSTEVFKPDLK
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHH
KFNPIENLKQKFKLKTFIELLKSIFKISGAALILYIVLKNRVELVIETAGVPPLVTAQIF
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHH
KEILYKAVTSIGMFFLVVAVIDLVYQRHSFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
IAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGVNLRARRIIAEAE
HHHHHHHCCHHHHHHHHHHHHCCCHHHEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHH
KYGVPIMRNVPLAHQLLDEGKELKFIPETTYEAVGEILLYITSLNAQNIENKNINQFDNL
HHCCCCCCCCCHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCC
>Mature Secondary Structure 
GEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFMTFSLSSFFAEHLGGFLVSIF
CCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RTAPQQHDPRLAVYYLKNCLMLILTVSLPLLGAVGFVGLLIGFLVVGPTFSTEVFKPDLK
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHH
KFNPIENLKQKFKLKTFIELLKSIFKISGAALILYIVLKNRVELVIETAGVPPLVTAQIF
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHH
KEILYKAVTSIGMFFLVVAVIDLVYQRHSFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
IAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGVNLRARRIIAEAE
HHHHHHHCCHHHHHHHHHHHHCCCHHHEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHH
KYGVPIMRNVPLAHQLLDEGKELKFIPETTYEAVGEILLYITSLNAQNIENKNINQFDNL
HHCCCCCCCCCHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9746557; 9748454; 11586360 [H]