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The map label for this gene is smpB

Identifier: 15834967

GI number: 15834967

Start: 411659

End: 412114

Strand: Direct

Name: smpB

Synonym: TC0348

Alternate gene names: 15834967

Gene position: 411659-412114 (Clockwise)

Preceding gene: 15834963

Following gene: 15834972

Centisome position: 38.37

GC content: 40.57

Gene sequence:

>456_bases
ATGAGCGTTAAGGAAATTGTTTCGAATCGCAAAGCCTTTCACAACTATGAAGTGTTAGAGACGTTTGACGCTGGGATCGT
TTTAACTGGAACAGAAATCAAATCTTTACGAGATCATGGTGGAAATTTAGGGGATGCTTACGTAACGATCTCAAAAGGAG
AAGCTTGGCTACTACAGTCAAGTATAGCGCCTTATCGCTTTGGGAATATTAACAACCATGAAGAGCGTCGTAAGCGCAAG
CTTCTTTTACATAAGTATGAACTTCAAAAGTTGGATTCACGAGTTTCTCAAAAAGGGTTAACGATCATACCTCTTAGCTT
CTTCTTCTCTAAAGGTTTTGTTAAAGTGCGTATTGGCTGTTGTCGAGGGAAAAAATCCCACGATAAGCGTCAGGCACTCA
TTGAACGAGAAAAGAATCGTGAATTAGCTGCCGCTATGAAGCGTTCTTATCGGTAA

Upstream 100 bases:

>100_bases
GCTGATTGGGATTATTATCAATGACAAAGGATGAATACTTTGTAGAGGAAAAGAAGAAATCTTTTTTGCTATACTGCCAT
TAGCTTTTAAGAGGTAAAAC

Downstream 100 bases:

>100_bases
TATAGACACAAAGATGTTTCTTTTTTGCCCAATCAAGAGCTTCTTGCTTAGAGGTGAAGGTAGTTAATGCTGTAGCCATA
GCATCTGCAAAAGCACAATT

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MSVKEIVSNRKAFHNYEVLETFDAGIVLTGTEIKSLRDHGGNLGDAYVTISKGEAWLLQSSIAPYRFGNINNHEERRKRK
LLLHKYELQKLDSRVSQKGLTIIPLSFFFSKGFVKVRIGCCRGKKSHDKRQALIEREKNRELAAAMKRSYR

Sequences:

>Translated_151_residues
MSVKEIVSNRKAFHNYEVLETFDAGIVLTGTEIKSLRDHGGNLGDAYVTISKGEAWLLQSSIAPYRFGNINNHEERRKRK
LLLHKYELQKLDSRVSQKGLTIIPLSFFFSKGFVKVRIGCCRGKKSHDKRQALIEREKNRELAAAMKRSYR
>Mature_150_residues
SVKEIVSNRKAFHNYEVLETFDAGIVLTGTEIKSLRDHGGNLGDAYVTISKGEAWLLQSSIAPYRFGNINNHEERRKRKL
LLHKYELQKLDSRVSQKGLTIIPLSFFFSKGFVKVRIGCCRGKKSHDKRQALIEREKNRELAAAMKRSYR

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=147, Percent_Identity=40.1360544217687, Blast_Score=110, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_CHLMU (Q9PKW3)

Other databases:

- EMBL:   AE002160
- PIR:   D81713
- RefSeq:   NP_296726.1
- ProteinModelPortal:   Q9PKW3
- SMR:   Q9PKW3
- GeneID:   1245701
- GenomeReviews:   AE002160_GR
- KEGG:   cmu:TC0348
- TIGR:   TC_0348
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- BioCyc:   CMUR243161:TC_0348-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 17383; Mature: 17252

Theoretical pI: Translated: 10.68; Mature: 10.68

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVKEIVSNRKAFHNYEVLETFDAGIVLTGTEIKSLRDHGGNLGDAYVTISKGEAWLLQS
CCHHHHHHHHHHHCCHHHHHHCCCCEEEECHHHHHHHHCCCCCCCEEEEEECCCEEEEEC
SIAPYRFGNINNHEERRKRKLLLHKYELQKLDSRVSQKGLTIIPLSFFFSKGFVKVRIGC
CCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCCEEEEEEEE
CRGKKSHDKRQALIEREKNRELAAAMKRSYR
CCCCCCCHHHHHHHHHHCCHHHHHHHHHCCC
>Mature Secondary Structure 
SVKEIVSNRKAFHNYEVLETFDAGIVLTGTEIKSLRDHGGNLGDAYVTISKGEAWLLQS
CHHHHHHHHHHHCCHHHHHHCCCCEEEECHHHHHHHHCCCCCCCEEEEEECCCEEEEEC
SIAPYRFGNINNHEERRKRKLLLHKYELQKLDSRVSQKGLTIIPLSFFFSKGFVKVRIGC
CCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCCEEEEEEEE
CRGKKSHDKRQALIEREKNRELAAAMKRSYR
CCCCCCCHHHHHHHHHHCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10684935