Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 15834938

GI number: 15834938

Start: 375172

End: 375885

Strand: Direct

Name: Not Available

Synonym: TC0318

Alternate gene names: 15834938

Gene position: 375172-375885 (Clockwise)

Preceding gene: 15834937

Following gene: 15834939

Centisome position: 34.97

GC content: 42.02

Gene sequence:

>714_bases
ATGACGCTATATCTTCTTCCCAATACTTTAGGTAACAAAAGAGTGGAGGACCTTCCTTCTATTGTAGGAGAGATTGTCCG
GAATAAAATTCAGGGATTAATAGTAGAAAGTGATCGTGGCGGTCGTTTGTTCCTAAGTTTATGGAAGGTTAAAGATCCGC
ATAAGTTCCCTCTTGCTGTAATGAGTAAGAATGATACTTCTGTTAAGGCTTGTGACTTCTATTTAGAACCTATTATTAAA
AAGGGAGAGTCTTGGGGGGTTATTTCTGATGCAGGATTGCCATGCATTGCTGATCCAGGGGTAAGGCTCGTTCAAAGAGC
TCGGTCATTAGGAGTGCCTGTTCAGGCTGTAGCTGGTCCTTGTTCCATTACGCAAGCATTAATGCTTTCTGGTCTACCTG
GTCAGAATTTCACATTTCATGGCTATCTTCCTCAAAATCCTAAAGAAAGAGCTCGTTATGTACGGGGATGCTCGGGGAAA
GCGCATACGCATATTTGCATAGAGACTCCTTATCGTAATCAATACACATTCGAAGCTTTGTTAGATCAGCTTCCAGCTCA
TGGAGAGCTTTGTGTTGCCATTGATTTGATGGGGGATCAGGAATATGTCTCGACACGTAGCGTTGCTGTTTGGAATCAAT
CTTCTGATCTAGAAGAGGTTCGCGAACGTTTGAAAAAAGTCCCCGCTATTTTTCTGTTCGTTAATTCTTTTTAG

Upstream 100 bases:

>100_bases
ACTGTAAATTTCTTTTGATCGGACGTTTTCGCAGTGTATTTTTTCCTTGGCATCTTCTAGAATGGACTCTAATCCAATTA
TTTAGGGATGCTTATTGTCT

Downstream 100 bases:

>100_bases
TTGTTTTATGCGAAACTTTGTTTTGTTTGTTAATTTAATTTTTTCTAATTAAAAGGAAATTAGTTTTAATTAATTAAAAA
GACAAAACATGAATGATAAA

Product: hypothetical protein

Products: NA

Alternate protein names: 16S rRNA 2'-O-ribose C1402 methyltransferase; rRNA (cytidine-2'-O-)-methyltransferase RsmI [H]

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MTLYLLPNTLGNKRVEDLPSIVGEIVRNKIQGLIVESDRGGRLFLSLWKVKDPHKFPLAVMSKNDTSVKACDFYLEPIIK
KGESWGVISDAGLPCIADPGVRLVQRARSLGVPVQAVAGPCSITQALMLSGLPGQNFTFHGYLPQNPKERARYVRGCSGK
AHTHICIETPYRNQYTFEALLDQLPAHGELCVAIDLMGDQEYVSTRSVAVWNQSSDLEEVRERLKKVPAIFLFVNSF

Sequences:

>Translated_237_residues
MTLYLLPNTLGNKRVEDLPSIVGEIVRNKIQGLIVESDRGGRLFLSLWKVKDPHKFPLAVMSKNDTSVKACDFYLEPIIK
KGESWGVISDAGLPCIADPGVRLVQRARSLGVPVQAVAGPCSITQALMLSGLPGQNFTFHGYLPQNPKERARYVRGCSGK
AHTHICIETPYRNQYTFEALLDQLPAHGELCVAIDLMGDQEYVSTRSVAVWNQSSDLEEVRERLKKVPAIFLFVNSF
>Mature_236_residues
TLYLLPNTLGNKRVEDLPSIVGEIVRNKIQGLIVESDRGGRLFLSLWKVKDPHKFPLAVMSKNDTSVKACDFYLEPIIKK
GESWGVISDAGLPCIADPGVRLVQRARSLGVPVQAVAGPCSITQALMLSGLPGQNFTFHGYLPQNPKERARYVRGCSGKA
HTHICIETPYRNQYTFEALLDQLPAHGELCVAIDLMGDQEYVSTRSVAVWNQSSDLEEVRERLKKVPAIFLFVNSF

Specific function: Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA [H]

COG id: COG0313

COG function: function code R; Predicted methyltransferases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmI family [H]

Homologues:

Organism=Escherichia coli, GI1789535, Length=201, Percent_Identity=28.3582089552239, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000878
- InterPro:   IPR014777
- InterPro:   IPR008189
- InterPro:   IPR018063 [H]

Pfam domain/function: PF00590 TP_methylase [H]

EC number: NA

Molecular weight: Translated: 26327; Mature: 26196

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLYLLPNTLGNKRVEDLPSIVGEIVRNKIQGLIVESDRGGRLFLSLWKVKDPHKFPLAV
CEEEEECCCCCCCHHHHHHHHHHHHHHHHHCEEEEECCCCCEEEEEEEECCCCCCCCEEE
MSKNDTSVKACDFYLEPIIKKGESWGVISDAGLPCIADPGVRLVQRARSLGVPVQAVAGP
EECCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHCCC
CSITQALMLSGLPGQNFTFHGYLPQNPKERARYVRGCSGKAHTHICIETPYRNQYTFEAL
HHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCEEHHHH
LDQLPAHGELCVAIDLMGDQEYVSTRSVAVWNQSSDLEEVRERLKKVPAIFLFVNSF
HHHCCCCCCEEEEEEECCCHHHHCCCEEEEECCCCCHHHHHHHHHHCCEEEEEEECC
>Mature Secondary Structure 
TLYLLPNTLGNKRVEDLPSIVGEIVRNKIQGLIVESDRGGRLFLSLWKVKDPHKFPLAV
EEEEECCCCCCCHHHHHHHHHHHHHHHHHCEEEEECCCCCEEEEEEEECCCCCCCCEEE
MSKNDTSVKACDFYLEPIIKKGESWGVISDAGLPCIADPGVRLVQRARSLGVPVQAVAGP
EECCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHCCC
CSITQALMLSGLPGQNFTFHGYLPQNPKERARYVRGCSGKAHTHICIETPYRNQYTFEAL
HHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCEEHHHH
LDQLPAHGELCVAIDLMGDQEYVSTRSVAVWNQSSDLEEVRERLKKVPAIFLFVNSF
HHHCCCCCCEEEEEEECCCHHHHCCCEEEEECCCCCHHHHHHHHHHCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]