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The map label for this gene is hctB

Identifier: 15834936

GI number: 15834936

Start: 373362

End: 373985

Strand: Direct

Name: hctB

Synonym: TC0316

Alternate gene names: 15834936

Gene position: 373362-373985 (Clockwise)

Preceding gene: 15834935

Following gene: 15834937

Centisome position: 34.8

GC content: 43.59

Gene sequence:

>624_bases
ATGTTGGGAGTACAAAAGAAACGCAGCACAAGAAAGACGGCTGCAAGAAAGACTGTAGTACGTAAGCCTGCCGCTAAGAA
GACGGCAGCTAAAAAAGCTTCGGTAAGAAAAGTTGCAGCTAAGAAGACTGTGGCTCGCAAGACTGTAGCTAAAAAAGCAG
TAGCAGCTAGAAAGCCTGCCGCTAAGAAGACGGCAGCTAAAAAAGCTCCAGTAAGAAAAGTCGCAGCTAAGAAGACTGTG
GCTCGTAAAACTGTAGCTAAAAAAGCAGTAGCAGCTCGCAAAACAGTAGCTAAAAAATCTGTAGCAGCTAGAAAGACGGC
AGCTAAAAAAGCTCCAGTAAGAAAAGTTGCAGCTAAGAAGACTGTGGCTCGCAAGACTGTAGCTAAAAAAGCAGTAGCAG
CTAGAAAGCCTGCCGCTAAAAGAACTGTCTCAACAAAAAAAACAGCCGTAGCAGCAAAAGCTGGAGTTTGTATGAAAAAA
CATAAACATACTGCAGCTTGCGGACGTGTAGCTGCTTCTGGAGTAAAAGTTTGTGCTTCCTCTGCTAAGAGAAGAACACA
TCATAATCGTTCTCGTACAGCTCATAGTTGGCGTCAGCAATTAATGAAGCTTGTTGCTAAATAG

Upstream 100 bases:

>100_bases
ATTTTTTTATTAAAAACCAACCTTTTTTATTAAAGTTTTTCATTCTTCCTGTCGATAGATCAAATAAGTGGTAGTTACCT
GTCTAATTAGGGGAATGAAC

Downstream 100 bases:

>100_bases
CAATTGCTGTTTCCAATCTGGAGTAACCGGGAAAAAGAATGCTCTTTTCCCGGTTTTTTATATTTATTGGCTGAGTTGAA
ATAGCTAGTATGGCTAGAAT

Product: Hc2 nucleoprotein

Products: NA

Alternate protein names: HC2 nucleoprotein; Histone H1-like protein KARP

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MLGVQKKRSTRKTAARKTVVRKPAAKKTAAKKASVRKVAAKKTVARKTVAKKAVAARKPAAKKTAAKKAPVRKVAAKKTV
ARKTVAKKAVAARKTVAKKSVAARKTAAKKAPVRKVAAKKTVARKTVAKKAVAARKPAAKRTVSTKKTAVAAKAGVCMKK
HKHTAACGRVAASGVKVCASSAKRRTHHNRSRTAHSWRQQLMKLVAK

Sequences:

>Translated_207_residues
MLGVQKKRSTRKTAARKTVVRKPAAKKTAAKKASVRKVAAKKTVARKTVAKKAVAARKPAAKKTAAKKAPVRKVAAKKTV
ARKTVAKKAVAARKTVAKKSVAARKTAAKKAPVRKVAAKKTVARKTVAKKAVAARKPAAKRTVSTKKTAVAAKAGVCMKK
HKHTAACGRVAASGVKVCASSAKRRTHHNRSRTAHSWRQQLMKLVAK
>Mature_207_residues
MLGVQKKRSTRKTAARKTVVRKPAAKKTAAKKASVRKVAAKKTVARKTVAKKAVAARKPAAKKTAAKKAPVRKVAAKKTV
ARKTVAKKAVAARKTVAKKSVAARKTAAKKAPVRKVAAKKTVARKTVAKKAVAARKPAAKRTVSTKKTAVAAKAGVCMKK
HKHTAACGRVAASGVKVCASSAKRRTHHNRSRTAHSWRQQLMKLVAK

Specific function: Might have a role in establishing the nucleoid structure of elementary bodies

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the histone H1/H5 family. HCT subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): HCT2_CHLMU (P38020)

Other databases:

- EMBL:   M86605
- EMBL:   AE002160
- PIR:   G81715
- RefSeq:   NP_296695.1
- GeneID:   1246359
- GenomeReviews:   AE002160_GR
- KEGG:   cmu:TC0316
- TIGR:   TC_0316
- OMA:   RKPVAKR
- ProtClustDB:   CLSK871154
- BioCyc:   CMUR243161:TC_0316-MONOMER
- InterPro:   IPR009970

Pfam domain/function: PF07382 HC2

EC number: NA

Molecular weight: Translated: 21982; Mature: 21982

Theoretical pI: Translated: 13.16; Mature: 13.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGVQKKRSTRKTAARKTVVRKPAAKKTAAKKASVRKVAAKKTVARKTVAKKAVAARKPA
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
AKKTAAKKAPVRKVAAKKTVARKTVAKKAVAARKTVAKKSVAARKTAAKKAPVRKVAAKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVARKTVAKKAVAARKPAAKRTVSTKKTAVAAKAGVCMKKHKHTAACGRVAASGVKVCAS
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAKRRTHHNRSRTAHSWRQQLMKLVAK
HHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLGVQKKRSTRKTAARKTVVRKPAAKKTAAKKASVRKVAAKKTVARKTVAKKAVAARKPA
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
AKKTAAKKAPVRKVAAKKTVARKTVAKKAVAARKTVAKKSVAARKTAAKKAPVRKVAAKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVARKTVAKKAVAARKPAAKRTVSTKKTAVAAKAGVCMKKHKHTAACGRVAASGVKVCAS
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAKRRTHHNRSRTAHSWRQQLMKLVAK
HHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1549572; 10684935