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The map label for this gene is recD

Identifier: 15834922

GI number: 15834922

Start: 358649

End: 360883

Strand: Reverse

Name: recD

Synonym: TC0302

Alternate gene names: 15834922

Gene position: 360883-358649 (Counterclockwise)

Preceding gene: 15834923

Following gene: 15834910

Centisome position: 33.63

GC content: 38.84

Gene sequence:

>2235_bases
ATGGGTTGCGAAGAGAAACTTTCCGGTACTTTGGAACTTATTCTTCCAGAAGATTCCCTATCCAATCAAATGGGATATGC
TTTCCTACGAGTCCCTTACAAAAATTCATTAGTGACCATTTGTGGAAATTCCTCTCTTTCTCTCTTTAAAATTGGAGCTT
CTGTTGATTTAACAGGTTATTGGAGTGTGGACGCTAGCGGAGCTTTAGTTTTTCGCTTTACTACAGCCAAAACGTACAGT
CCTTCTTTGGGAATCATAGCCTACCTTACTTCCCAAATCAAAGGCGTGGGTCCCAAACTTGCTCAGAAAATTATAGCAAC
CTTTGGAGAAGAAACTCTTTCTGTGCTTGATTCATGTCCCTCCAAACTTGTAGAAGTAGATGGAATCTCTCTTGCCCGCT
GTGAGGATTTTTCTAGGCAACTCCACGAGCAAAAAGACCTACGTAATGCCCTACTATTTCTGCAACGACATGGAATTGCT
ATTCACTATGGCTTACGTCTATATAAAAAATACCAAAACCAAACTATTGATAAAGTCTGTCAAGATCCTTTTCTTCTTGC
AAAGGAAATGTATGGTGTAGGGTTTAAAACTGCAGATCTCATTGCCTCATGTCTTGGAGTCCCACTGAATTCTCCTAATC
GTATCGTTGCAGGAATTCAATACTCTTTAGATGAACTGCAAGAAGAAGGCCATACGTGCTATCCCCTTAATGATTTCATT
GTTCTCGTTGAAAAACTACTGAACGAAGATACTCCTGAAAAAATTGTACGTAAGGAAGAAATCCTTACTCAAGTGCATTT
TCTGTCTCGACAAAAAGCTGTTTATATCAAAGAACTAGAACAGGACTCTTATATCTGGTCTAGACAGCTTTTTCTTGCCG
AACAACAAATCGCTATAGACATCCGAAGACTTTTATTTTCTTCGAAACGCATCCAGCCTATCAATACCCAAGAGGCAATT
CTTGAAGTAGAAAATCTTCTGGATTTAAAGCTGGAAGACAAGCAAAAAGAAGCTCTCTATGCTAGTTCTTCCCAAAAAAT
CCACATCATATCTGGGGGACCAGGAACTGGGAAAAGTACAATTACACGGGCTATTCTCTCAATCTTTGAAAAAATCTCGT
CTCCCCAAAAAATCATCCTTGCAGCTCCCACTGGAAAAGCTGCAAAACGCATGACGGAAATCACAGGGAAACGTACCCAA
ACAATCCATTCCTTACTTCAATATGATTTTAAGACTTTGTCATTTCGTAAAAATCATGAAGATCCTATTGATTGCGATCT
CGTTATTATTGATGAATCAGGAATGATCGATACGATTCTCCTTCAAAGATTCCTTGCTGCATTACCTGATCATGCTATTC
TTATCCTAATTGGAGATGTGCACCAGCTACCTAGCGTAGGCCCAGGCAATGTCCTTAAAGACCTCATTCTTTCAAACCAT
ATTGAGGTAACCTACTTAACCAAGATCTTCCGTCAGTTACAAAATTCCAATATCATTACTAATGCTCACAAAGTAAACCA
GGGGGAATTCCCCGTCCTTAACAGCTCTTCTGGAAAAAAAGACTTTTTATTCTTTCAAAAAGAAGATCCAGAAGAGGCTA
TAAAGCATATTATCCATCTTGTTTCTGATTTCGTTCCGAAAAAATTCGGCATCTTTATGAAAGACATTCAAGTCCTTGCT
CCTATGAAAAAAGGAGTACTAGGGATTTTCAATCTGAATAAAGAATTGAAAGCTGCTCTCAACCCCAATAAACCATTTAT
CCAAGGGAAGTTTCACTCCTTCTCTACGGGAGATCGCGTTATGCAAACGCGAAATAACTATAATAAAGAAGTTTTCAATG
GAGATATTGGGTACATCGCCTCTATAGATTTTGCTAAAAAAAGTTTAGTAGCTTGTGTTGATGGCCGATATATTTGTTAT
TCACAAACGGAACTAAACGACTTAACACCAGCTTATGCTACTTCCATACATAAGTATCAGGGAAGTGAGGCCTCATGCGT
GATTCTACCTATCCATACCTCTCATTATGTTATGCTGTATAGAAACCTCCTCTATACAGCAATCACGAGAGGGAAAAAAC
TGGTTATTCTAGTAGGAACTAAAAAAGCTATTGCTATCGCTGTACGCAATGATAAAGTACAACATCGATGCACTGGACTA
CAACAATCTGTACAAACTCTCCTTAATAAGCCTATTCCGCTTTTCTCTCCCACATACACGATTTGCAAACCTTAG

Upstream 100 bases:

>100_bases
AAAAAAATACCGATCGGAGACTTATGATAATCTATAATGCTGTCCGATACCGACTTAAGCCTTTCTAAGATTCGAATACT
TCCAAGAGAGTTAAAAAGAT

Downstream 100 bases:

>100_bases
GGTAAAAAAAGAAGGGGTTCATTCTTGTAAGGTCACAGGACAAGCTGTAATTTTCTCTAATAGATAAATCCCAAGTCAAA
AAAAAAAGGATTCTAGTACA

Product: exodeoxyribonuclease V, alpha subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 744; Mature: 743

Protein sequence:

>744_residues
MGCEEKLSGTLELILPEDSLSNQMGYAFLRVPYKNSLVTICGNSSLSLFKIGASVDLTGYWSVDASGALVFRFTTAKTYS
PSLGIIAYLTSQIKGVGPKLAQKIIATFGEETLSVLDSCPSKLVEVDGISLARCEDFSRQLHEQKDLRNALLFLQRHGIA
IHYGLRLYKKYQNQTIDKVCQDPFLLAKEMYGVGFKTADLIASCLGVPLNSPNRIVAGIQYSLDELQEEGHTCYPLNDFI
VLVEKLLNEDTPEKIVRKEEILTQVHFLSRQKAVYIKELEQDSYIWSRQLFLAEQQIAIDIRRLLFSSKRIQPINTQEAI
LEVENLLDLKLEDKQKEALYASSSQKIHIISGGPGTGKSTITRAILSIFEKISSPQKIILAAPTGKAAKRMTEITGKRTQ
TIHSLLQYDFKTLSFRKNHEDPIDCDLVIIDESGMIDTILLQRFLAALPDHAILILIGDVHQLPSVGPGNVLKDLILSNH
IEVTYLTKIFRQLQNSNIITNAHKVNQGEFPVLNSSSGKKDFLFFQKEDPEEAIKHIIHLVSDFVPKKFGIFMKDIQVLA
PMKKGVLGIFNLNKELKAALNPNKPFIQGKFHSFSTGDRVMQTRNNYNKEVFNGDIGYIASIDFAKKSLVACVDGRYICY
SQTELNDLTPAYATSIHKYQGSEASCVILPIHTSHYVMLYRNLLYTAITRGKKLVILVGTKKAIAIAVRNDKVQHRCTGL
QQSVQTLLNKPIPLFSPTYTICKP

Sequences:

>Translated_744_residues
MGCEEKLSGTLELILPEDSLSNQMGYAFLRVPYKNSLVTICGNSSLSLFKIGASVDLTGYWSVDASGALVFRFTTAKTYS
PSLGIIAYLTSQIKGVGPKLAQKIIATFGEETLSVLDSCPSKLVEVDGISLARCEDFSRQLHEQKDLRNALLFLQRHGIA
IHYGLRLYKKYQNQTIDKVCQDPFLLAKEMYGVGFKTADLIASCLGVPLNSPNRIVAGIQYSLDELQEEGHTCYPLNDFI
VLVEKLLNEDTPEKIVRKEEILTQVHFLSRQKAVYIKELEQDSYIWSRQLFLAEQQIAIDIRRLLFSSKRIQPINTQEAI
LEVENLLDLKLEDKQKEALYASSSQKIHIISGGPGTGKSTITRAILSIFEKISSPQKIILAAPTGKAAKRMTEITGKRTQ
TIHSLLQYDFKTLSFRKNHEDPIDCDLVIIDESGMIDTILLQRFLAALPDHAILILIGDVHQLPSVGPGNVLKDLILSNH
IEVTYLTKIFRQLQNSNIITNAHKVNQGEFPVLNSSSGKKDFLFFQKEDPEEAIKHIIHLVSDFVPKKFGIFMKDIQVLA
PMKKGVLGIFNLNKELKAALNPNKPFIQGKFHSFSTGDRVMQTRNNYNKEVFNGDIGYIASIDFAKKSLVACVDGRYICY
SQTELNDLTPAYATSIHKYQGSEASCVILPIHTSHYVMLYRNLLYTAITRGKKLVILVGTKKAIAIAVRNDKVQHRCTGL
QQSVQTLLNKPIPLFSPTYTICKP
>Mature_743_residues
GCEEKLSGTLELILPEDSLSNQMGYAFLRVPYKNSLVTICGNSSLSLFKIGASVDLTGYWSVDASGALVFRFTTAKTYSP
SLGIIAYLTSQIKGVGPKLAQKIIATFGEETLSVLDSCPSKLVEVDGISLARCEDFSRQLHEQKDLRNALLFLQRHGIAI
HYGLRLYKKYQNQTIDKVCQDPFLLAKEMYGVGFKTADLIASCLGVPLNSPNRIVAGIQYSLDELQEEGHTCYPLNDFIV
LVEKLLNEDTPEKIVRKEEILTQVHFLSRQKAVYIKELEQDSYIWSRQLFLAEQQIAIDIRRLLFSSKRIQPINTQEAIL
EVENLLDLKLEDKQKEALYASSSQKIHIISGGPGTGKSTITRAILSIFEKISSPQKIILAAPTGKAAKRMTEITGKRTQT
IHSLLQYDFKTLSFRKNHEDPIDCDLVIIDESGMIDTILLQRFLAALPDHAILILIGDVHQLPSVGPGNVLKDLILSNHI
EVTYLTKIFRQLQNSNIITNAHKVNQGEFPVLNSSSGKKDFLFFQKEDPEEAIKHIIHLVSDFVPKKFGIFMKDIQVLAP
MKKGVLGIFNLNKELKAALNPNKPFIQGKFHSFSTGDRVMQTRNNYNKEVFNGDIGYIASIDFAKKSLVACVDGRYICYS
QTELNDLTPAYATSIHKYQGSEASCVILPIHTSHYVMLYRNLLYTAITRGKKLVILVGTKKAIAIAVRNDKVQHRCTGLQ
QSVQTLLNKPIPLFSPTYTICKP

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789182, Length=444, Percent_Identity=27.027027027027, Blast_Score=127, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 83336; Mature: 83205

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGCEEKLSGTLELILPEDSLSNQMGYAFLRVPYKNSLVTICGNSSLSLFKIGASVDLTGY
CCCCHHCCCCEEEEECCHHHCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCEEEEEEE
WSVDASGALVFRFTTAKTYSPSLGIIAYLTSQIKGVGPKLAQKIIATFGEETLSVLDSCP
EEECCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHCH
SKLVEVDGISLARCEDFSRQLHEQKDLRNALLFLQRHGIAIHYGLRLYKKYQNQTIDKVC
HHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHCCHHHHHH
QDPFLLAKEMYGVGFKTADLIASCLGVPLNSPNRIVAGIQYSLDELQEEGHTCYPLNDFI
CCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHCCCEECCHHHHH
VLVEKLLNEDTPEKIVRKEEILTQVHFLSRQKAVYIKELEQDSYIWSRQLFLAEQQIAID
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHH
IRRLLFSSKRIQPINTQEAILEVENLLDLKLEDKQKEALYASSSQKIHIISGGPGTGKST
HHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEEEEECCCCCCHHH
ITRAILSIFEKISSPQKIILAAPTGKAAKRMTEITGKRTQTIHSLLQYDFKTLSFRKNHE
HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCC
DPIDCDLVIIDESGMIDTILLQRFLAALPDHAILILIGDVHQLPSVGPGNVLKDLILSNH
CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECHHHCCCCCCHHHHHHHHHHCC
IEVTYLTKIFRQLQNSNIITNAHKVNQGEFPVLNSSSGKKDFLFFQKEDPEEAIKHIIHL
CHHHHHHHHHHHHCCCCEEECCEECCCCCCCEEECCCCCCEEEEEECCCHHHHHHHHHHH
VSDFVPKKFGIFMKDIQVLAPMKKGVLGIFNLNKELKAALNPNKPFIQGKFHSFSTGDRV
HHHHCCHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHCCCCCCEEEECCCCCCCCHHH
MQTRNNYNKEVFNGDIGYIASIDFAKKSLVACVDGRYICYSQTELNDLTPAYATSIHKYQ
HHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHEECCCEEEEECCCCCCCCHHHHHHHHHCC
GSEASCVILPIHTSHYVMLYRNLLYTAITRGKKLVILVGTKKAIAIAVRNDKVQHRCTGL
CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEEECCCHHHHHHHH
QQSVQTLLNKPIPLFSPTYTICKP
HHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GCEEKLSGTLELILPEDSLSNQMGYAFLRVPYKNSLVTICGNSSLSLFKIGASVDLTGY
CCCHHCCCCEEEEECCHHHCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCEEEEEEE
WSVDASGALVFRFTTAKTYSPSLGIIAYLTSQIKGVGPKLAQKIIATFGEETLSVLDSCP
EEECCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHCH
SKLVEVDGISLARCEDFSRQLHEQKDLRNALLFLQRHGIAIHYGLRLYKKYQNQTIDKVC
HHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHCCHHHHHH
QDPFLLAKEMYGVGFKTADLIASCLGVPLNSPNRIVAGIQYSLDELQEEGHTCYPLNDFI
CCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHCCCEECCHHHHH
VLVEKLLNEDTPEKIVRKEEILTQVHFLSRQKAVYIKELEQDSYIWSRQLFLAEQQIAID
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHH
IRRLLFSSKRIQPINTQEAILEVENLLDLKLEDKQKEALYASSSQKIHIISGGPGTGKST
HHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEEEEECCCCCCHHH
ITRAILSIFEKISSPQKIILAAPTGKAAKRMTEITGKRTQTIHSLLQYDFKTLSFRKNHE
HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCC
DPIDCDLVIIDESGMIDTILLQRFLAALPDHAILILIGDVHQLPSVGPGNVLKDLILSNH
CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECHHHCCCCCCHHHHHHHHHHCC
IEVTYLTKIFRQLQNSNIITNAHKVNQGEFPVLNSSSGKKDFLFFQKEDPEEAIKHIIHL
CHHHHHHHHHHHHCCCCEEECCEECCCCCCCEEECCCCCCEEEEEECCCHHHHHHHHHHH
VSDFVPKKFGIFMKDIQVLAPMKKGVLGIFNLNKELKAALNPNKPFIQGKFHSFSTGDRV
HHHHCCHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHCCCCCCEEEECCCCCCCCHHH
MQTRNNYNKEVFNGDIGYIASIDFAKKSLVACVDGRYICYSQTELNDLTPAYATSIHKYQ
HHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHEECCCEEEEECCCCCCCCHHHHHHHHHCC
GSEASCVILPIHTSHYVMLYRNLLYTAITRGKKLVILVGTKKAIAIAVRNDKVQHRCTGL
CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEEECCCHHHHHHHH
QQSVQTLLNKPIPLFSPTYTICKP
HHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]