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The map label for this gene is cydB

Identifier: 15834902

GI number: 15834902

Start: 337131

End: 338186

Strand: Direct

Name: cydB

Synonym: TC0282

Alternate gene names: 15834902

Gene position: 337131-338186 (Clockwise)

Preceding gene: 15834901

Following gene: 15834904

Centisome position: 31.42

GC content: 38.26

Gene sequence:

>1056_bases
ATGGAGTTAGCAACGATTCTTCCTGTTATTTGGTATGCCATTCTTTGTATTGCAGTATTTGCTTATGCTTTAGGGGATGG
GTTTGATTTGGGATTAAGCACGATCTATTTTCTTTCGAAAGAAGAGAAAGAGCGTCGTTTGTTATTAAATTCGATAGGCC
CTGTCTGGGATGGTAATGAAGTTTGGTTTGTGATCATATTTGCAGGGTTATTTGCAGGATTTCCATCTGCTTATGGAACA
TTGCTTTCTATCTTTTACATGCCTATTTGGACAATGGTCATGTTATACGTGTTTCGAGGCTGTTCTTTAGAGTTCCGAAG
TAAGGCTGAGTCTCGTCGTTGGAAGTTTTTCTGGGACATTCTTTTTTCTGCTTCAGGGACGTTTATTAGCTTCTTTCTCG
GAACTTTATCTGGAAATTTATTGCTTGGACTGCCAATAGCTCCGGAGACTTCTTACAGTTCTTTGTCTTGGGGACTATTT
TTTCGACCTTATTCTGTATTATGCGGGCTATTTGTAGTTGCTGCCTTCGCTTTACATGGGATTAGTTTCGCTTTGACTAA
AACAGCAGAAGGGTTTCAATTACGATTGAAAAATCGGTTCTATTATGTTCTATCTGCTTACTTAGTTTTGTATCTTGGTT
TACTTATCGCTACAATGCTAGGGAGACCTCATGCTATTGGAGTTTGTTGTCGTTTGGGAATTGGGACGGGTATTCCCGCT
TATCCATTATTGATTTTATTGGCTGTAGCAACATTTTCTTGTTGTTATGCAGAAAAGAAAGCTATGGATGTCTCTAAATA
CGGCAAAGCTTTTGCTTTCTCCTGTATTAATTTGTTATTCCCAATATTAGCTTATAACGTATTGCTTTTCCCTAATTTGC
TAGTGTCTTCTGTAGATGGTCGTTACACTATAACGATTTTTAATGCAGCTGTGGACCCTAAGGCTTTACAGCACCTCATT
ACTATTGTTTTAATCGGTCTTCCCTTTGTCATTGCTTACGCAGTATACGTGTATCGAGTGTTCAGAGGAAAAACAGATTT
CCCTTCAATTTATTGA

Upstream 100 bases:

>100_bases
TATGTTTATTGAGTGTTTTTATTTCTCTTCTTTTGAAAAAAATAGGAGAGGGACCAGATGATAAAGACCTTGTAGAAGCA
GATTGGTGAGGGCTTTCATA

Downstream 100 bases:

>100_bases
ATGGTTGCTACTGTCAGAAATATAGGGCTTGTTAAAAGCTCTATATTTCTGAAGACAGGAAGCAGTGGGGGAAACAGATT
TTGTTGAAAATAGTTAAAGC

Product: cytochrome D ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MELATILPVIWYAILCIAVFAYALGDGFDLGLSTIYFLSKEEKERRLLLNSIGPVWDGNEVWFVIIFAGLFAGFPSAYGT
LLSIFYMPIWTMVMLYVFRGCSLEFRSKAESRRWKFFWDILFSASGTFISFFLGTLSGNLLLGLPIAPETSYSSLSWGLF
FRPYSVLCGLFVVAAFALHGISFALTKTAEGFQLRLKNRFYYVLSAYLVLYLGLLIATMLGRPHAIGVCCRLGIGTGIPA
YPLLILLAVATFSCCYAEKKAMDVSKYGKAFAFSCINLLFPILAYNVLLFPNLLVSSVDGRYTITIFNAAVDPKALQHLI
TIVLIGLPFVIAYAVYVYRVFRGKTDFPSIY

Sequences:

>Translated_351_residues
MELATILPVIWYAILCIAVFAYALGDGFDLGLSTIYFLSKEEKERRLLLNSIGPVWDGNEVWFVIIFAGLFAGFPSAYGT
LLSIFYMPIWTMVMLYVFRGCSLEFRSKAESRRWKFFWDILFSASGTFISFFLGTLSGNLLLGLPIAPETSYSSLSWGLF
FRPYSVLCGLFVVAAFALHGISFALTKTAEGFQLRLKNRFYYVLSAYLVLYLGLLIATMLGRPHAIGVCCRLGIGTGIPA
YPLLILLAVATFSCCYAEKKAMDVSKYGKAFAFSCINLLFPILAYNVLLFPNLLVSSVDGRYTITIFNAAVDPKALQHLI
TIVLIGLPFVIAYAVYVYRVFRGKTDFPSIY
>Mature_351_residues
MELATILPVIWYAILCIAVFAYALGDGFDLGLSTIYFLSKEEKERRLLLNSIGPVWDGNEVWFVIIFAGLFAGFPSAYGT
LLSIFYMPIWTMVMLYVFRGCSLEFRSKAESRRWKFFWDILFSASGTFISFFLGTLSGNLLLGLPIAPETSYSSLSWGLF
FRPYSVLCGLFVVAAFALHGISFALTKTAEGFQLRLKNRFYYVLSAYLVLYLGLLIATMLGRPHAIGVCCRLGIGTGIPA
YPLLILLAVATFSCCYAEKKAMDVSKYGKAFAFSCINLLFPILAYNVLLFPNLLVSSVDGRYTITIFNAAVDPKALQHLI
TIVLIGLPFVIAYAVYVYRVFRGKTDFPSIY

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=374, Percent_Identity=26.2032085561497, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1787213, Length=360, Percent_Identity=26.6666666666667, Blast_Score=114, Evalue=9e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 39199; Mature: 39199

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELATILPVIWYAILCIAVFAYALGDGFDLGLSTIYFLSKEEKERRLLLNSIGPVWDGNE
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VWFVIIFAGLFAGFPSAYGTLLSIFYMPIWTMVMLYVFRGCSLEFRSKAESRRWKFFWDI
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LFSASGTFISFFLGTLSGNLLLGLPIAPETSYSSLSWGLFFRPYSVLCGLFVVAAFALHG
HHHCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ISFALTKTAEGFQLRLKNRFYYVLSAYLVLYLGLLIATMLGRPHAIGVCCRLGIGTGIPA
HHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCH
YPLLILLAVATFSCCYAEKKAMDVSKYGKAFAFSCINLLFPILAYNVLLFPNLLVSSVDG
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RYTITIFNAAVDPKALQHLITIVLIGLPFVIAYAVYVYRVFRGKTDFPSIY
CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MELATILPVIWYAILCIAVFAYALGDGFDLGLSTIYFLSKEEKERRLLLNSIGPVWDGNE
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VWFVIIFAGLFAGFPSAYGTLLSIFYMPIWTMVMLYVFRGCSLEFRSKAESRRWKFFWDI
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LFSASGTFISFFLGTLSGNLLLGLPIAPETSYSSLSWGLFFRPYSVLCGLFVVAAFALHG
HHHCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ISFALTKTAEGFQLRLKNRFYYVLSAYLVLYLGLLIATMLGRPHAIGVCCRLGIGTGIPA
HHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCH
YPLLILLAVATFSCCYAEKKAMDVSKYGKAFAFSCINLLFPILAYNVLLFPNLLVSSVDG
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RYTITIFNAAVDPKALQHLITIVLIGLPFVIAYAVYVYRVFRGKTDFPSIY
CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]