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The map label for this gene is cydA

Identifier: 15834901

GI number: 15834901

Start: 335779

End: 337119

Strand: Direct

Name: cydA

Synonym: TC0281

Alternate gene names: 15834901

Gene position: 335779-337119 (Clockwise)

Preceding gene: 15834897

Following gene: 15834902

Centisome position: 31.29

GC content: 39.3

Gene sequence:

>1341_bases
ATGAGTGCTGAGATGTTGGCGAGAGTGCAGTTTGCGTTGTTTATTGGATTTCATTACCTCTTCGTTCCTATCAGCTTAGG
ATTAAGCATGATGATAGTTCTTATGGAAGGGCTCTATCTATTCACAAAAAAGAGTATTTATAATCAGCTAACTTGGTTTT
GGATTAAAATTTTCACGCTAACTTTTGTAGTCGGTGTTGTTTCTGGACTTATGCAAATTTTTTCTTTCGGATCAAATTGG
TCTCGATTTTCAGAATACACTGGAAATATTTTTGGGATGTTCTTAGGTAGCGAAGGAATGTTTGCTTTCTTCTTGGAATC
GGGATTTTTAGGAGTTTTGTTATTTGGCCGTCATAAGGTATCTAAGAAAATGCATTTTTTTGCAGCTTGTATGGTAGCTT
TAGGTGCTCATATGAGTGCTTTTTGGATTGTTTGTGCGAATTCTTGGATGCAGACGCCTTCTGGTTATGAAATGGTTATG
CGAAATGGAGTCCTGATTCCCCAAATGACTTCTTTTTGGGCGGCTGTACTATCTCCTTCTGCTTTGCAGCGTTTTACACA
TGTTGTTCTTGGAGCATGGTTATCTGGAATATTTCTTGTTTTATCTGTAAGTGCTCATTATTTGCGTAAAGATCGACATA
CAGAATTTGCGAAACAAGGGTTAAAGCTTAGTATGTTTTCTGCTTTGCTAGTTTTGGTTTTGCAGCTTTGGTCAGCGGAT
GTCACTGCTCGAGGAGTTGCTAAGCACCAGCCTGCAAAACTCGCTGCTTTTGAGGGAGTGTTTAAAACACAAGAGCATAC
ACCGATTTATCTGCTTGGCATTGTTGACATGAAAAAGGAGCGAGTAATTGGCATTCCCATTCCTTCCGGATTATCGTTTC
TAGTTCATCGAAATGCAAAAACACCTGTTACAGGACTTGATCAGTTCCCTAAAGACGAATGGCCAAATGTATCTTTCGTC
TTTCAAACTTATCATCTGATGGTCATGCTTTGGGGAGCTATGGTTCTTTTATCCCTAATAGCGTTTGCTGTGCATAAGAA
AAAAGCTTGGGCTTGCAGAAAAGGAGTTCTATGGATGCTTTCGCTTTCCGTGTTATGTCCAGAGCTATGCAATGAAATTG
GCTGGATTTCTACAGAAGTTGGGCGTCAGCCCTGGGTCGTCTATGGTTTATTAAAAACCAAAGATGCAACGTCGCCTATC
GTTAATGCAGGACAAATTTGGCAGTCTTTGACTCTATTTTCGATAGTTTTTGTATGTTTATTGAGTGTTTTTATTTCTCT
TCTTTTGAAAAAAATAGGAGAGGGACCAGATGATAAAGACCTTGTAGAAGCAGATTGGTGA

Upstream 100 bases:

>100_bases
ATTTTATGGAGAGGACTGATTTAACAACTGATGACAGGGAAACGTGCGTAGTATATATACTACAGAGAATGCAAATAGTT
TTTGATTTGGAGAGCCAAAT

Downstream 100 bases:

>100_bases
GGGCTTTCATAATGGAGTTAGCAACGATTCTTCCTGTTATTTGGTATGCCATTCTTTGTATTGCAGTATTTGCTTATGCT
TTAGGGGATGGGTTTGATTT

Product: cytochrome D ubiquinol oxidase, subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 446; Mature: 445

Protein sequence:

>446_residues
MSAEMLARVQFALFIGFHYLFVPISLGLSMMIVLMEGLYLFTKKSIYNQLTWFWIKIFTLTFVVGVVSGLMQIFSFGSNW
SRFSEYTGNIFGMFLGSEGMFAFFLESGFLGVLLFGRHKVSKKMHFFAACMVALGAHMSAFWIVCANSWMQTPSGYEMVM
RNGVLIPQMTSFWAAVLSPSALQRFTHVVLGAWLSGIFLVLSVSAHYLRKDRHTEFAKQGLKLSMFSALLVLVLQLWSAD
VTARGVAKHQPAKLAAFEGVFKTQEHTPIYLLGIVDMKKERVIGIPIPSGLSFLVHRNAKTPVTGLDQFPKDEWPNVSFV
FQTYHLMVMLWGAMVLLSLIAFAVHKKKAWACRKGVLWMLSLSVLCPELCNEIGWISTEVGRQPWVVYGLLKTKDATSPI
VNAGQIWQSLTLFSIVFVCLLSVFISLLLKKIGEGPDDKDLVEADW

Sequences:

>Translated_446_residues
MSAEMLARVQFALFIGFHYLFVPISLGLSMMIVLMEGLYLFTKKSIYNQLTWFWIKIFTLTFVVGVVSGLMQIFSFGSNW
SRFSEYTGNIFGMFLGSEGMFAFFLESGFLGVLLFGRHKVSKKMHFFAACMVALGAHMSAFWIVCANSWMQTPSGYEMVM
RNGVLIPQMTSFWAAVLSPSALQRFTHVVLGAWLSGIFLVLSVSAHYLRKDRHTEFAKQGLKLSMFSALLVLVLQLWSAD
VTARGVAKHQPAKLAAFEGVFKTQEHTPIYLLGIVDMKKERVIGIPIPSGLSFLVHRNAKTPVTGLDQFPKDEWPNVSFV
FQTYHLMVMLWGAMVLLSLIAFAVHKKKAWACRKGVLWMLSLSVLCPELCNEIGWISTEVGRQPWVVYGLLKTKDATSPI
VNAGQIWQSLTLFSIVFVCLLSVFISLLLKKIGEGPDDKDLVEADW
>Mature_445_residues
SAEMLARVQFALFIGFHYLFVPISLGLSMMIVLMEGLYLFTKKSIYNQLTWFWIKIFTLTFVVGVVSGLMQIFSFGSNWS
RFSEYTGNIFGMFLGSEGMFAFFLESGFLGVLLFGRHKVSKKMHFFAACMVALGAHMSAFWIVCANSWMQTPSGYEMVMR
NGVLIPQMTSFWAAVLSPSALQRFTHVVLGAWLSGIFLVLSVSAHYLRKDRHTEFAKQGLKLSMFSALLVLVLQLWSADV
TARGVAKHQPAKLAAFEGVFKTQEHTPIYLLGIVDMKKERVIGIPIPSGLSFLVHRNAKTPVTGLDQFPKDEWPNVSFVF
QTYHLMVMLWGAMVLLSLIAFAVHKKKAWACRKGVLWMLSLSVLCPELCNEIGWISTEVGRQPWVVYGLLKTKDATSPIV
NAGQIWQSLTLFSIVFVCLLSVFISLLLKKIGEGPDDKDLVEADW

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=490, Percent_Identity=31.2244897959184, Blast_Score=218, Evalue=6e-58,
Organism=Escherichia coli, GI1787212, Length=315, Percent_Identity=36.5079365079365, Blast_Score=211, Evalue=7e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 50141; Mature: 50010

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SAEMLARVQFALFIGFHYLFVPISLGLSMMIVLMEGLYLFTKKSIYNQLTWFWIKIFTL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFVVGVVSGLMQIFSFGSNWSRFSEYTGNIFGMFLGSEGMFAFFLESGFLGVLLFGRHKV
HHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEECCCCCEEHHHHCCCHHHHHHHHHHH
SKKMHFFAACMVALGAHMSAFWIVCANSWMQTPSGYEMVMRNGVLIPQMTSFWAAVLSPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHCHH
ALQRFTHVVLGAWLSGIFLVLSVSAHYLRKDRHTEFAKQGLKLSMFSALLVLVLQLWSAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
VTARGVAKHQPAKLAAFEGVFKTQEHTPIYLLGIVDMKKERVIGIPIPSGLSFLVHRNAK
CHHCCHHHCCCCHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEECCCCCCHHHEECCCC
TPVTGLDQFPKDEWPNVSFVFQTYHLMVMLWGAMVLLSLIAFAVHKKKAWACRKGVLWML
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLSVLCPELCNEIGWISTEVGRQPWVVYGLLKTKDATSPIVNAGQIWQSLTLFSIVFVCL
HHHHHHHHHHHHHCCCCHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LSVFISLLLKKIGEGPDDKDLVEADW
HHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]