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The map label for this gene is ctc

Identifier: 15834802

GI number: 15834802

Start: 216760

End: 217317

Strand: Direct

Name: ctc

Synonym: TC0182

Alternate gene names: 15834802

Gene position: 216760-217317 (Clockwise)

Preceding gene: 15834800

Following gene: 15834803

Centisome position: 20.2

GC content: 38.35

Gene sequence:

>558_bases
ATGGAACTCGTAGTTCAAAGTCGTGAGACTGATAAGAAGTCTGTTATTAAAAAAATTCGTCAGCAGGGTGGAATTCCAGC
TGTTCTTTATTCCGGGGGAAAGAGCCTAGCTAATGTTGTTATTGATGCCCGTGTTTTCAACAAGTTTCTTTCTACTTTGG
AAAGTGGTGCTTTAGCTTCTACAGTTTTCACTCTTTCTTATGAAGGCCGAGAGATCAAGGCTTTAGTAAAGGATATTCAG
TATCATGTAACGACTTATGATGTCATCCATCTTGATTTTGAAGAGTTAGTTGAAGATCGAGAAGTTCGTTTGAATATTCC
TATTCGCTGCATCAACACTGTAGACTGTGTTGGGGTTAAGTTAGGGGGATCTTTAAGACAAGTAATTCGCTATATGCGTG
TTGTATGTAAGCCAAAAGATATTGTTCCATTTTTGGAATTAGATGTTCAGTCTTTAGGGCTTTCTCAGACTTTAAAATTA
TCGGATATCCGTATTCCTGAGGGAATTAAACCTGTTACTCCGCTTAAAGAAGTTGCTGTAACAGTGGCTCGACGATAA

Upstream 100 bases:

>100_bases
GGTATAGCGCATAGGACCGTTTATCCGGTTGAGGGAAAAGAAAAGCCCCTAAGGTCTTTTCAAAGGCCTTTGAGCTCAAG
GTAATGGAGAATAGCATTTT

Downstream 100 bases:

>100_bases
GATTATCATGGTGAAGCTGGTTGTTGGTATAGGGAATCCTGGAAGGCAATATGTCTGGACAAGACATAATATAGGGTTCC
TTTTTCTAGACATGCTGGCA

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MELVVQSRETDKKSVIKKIRQQGGIPAVLYSGGKSLANVVIDARVFNKFLSTLESGALASTVFTLSYEGREIKALVKDIQ
YHVTTYDVIHLDFEELVEDREVRLNIPIRCINTVDCVGVKLGGSLRQVIRYMRVVCKPKDIVPFLELDVQSLGLSQTLKL
SDIRIPEGIKPVTPLKEVAVTVARR

Sequences:

>Translated_185_residues
MELVVQSRETDKKSVIKKIRQQGGIPAVLYSGGKSLANVVIDARVFNKFLSTLESGALASTVFTLSYEGREIKALVKDIQ
YHVTTYDVIHLDFEELVEDREVRLNIPIRCINTVDCVGVKLGGSLRQVIRYMRVVCKPKDIVPFLELDVQSLGLSQTLKL
SDIRIPEGIKPVTPLKEVAVTVARR
>Mature_185_residues
MELVVQSRETDKKSVIKKIRQQGGIPAVLYSGGKSLANVVIDARVFNKFLSTLESGALASTVFTLSYEGREIKALVKDIQ
YHVTTYDVIHLDFEELVEDREVRLNIPIRCINTVDCVGVKLGGSLRQVIRYMRVVCKPKDIVPFLELDVQSLGLSQTLKL
SDIRIPEGIKPVTPLKEVAVTVARR

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL25_CHLMU (Q9PLC2)

Other databases:

- EMBL:   AE002160
- PIR:   B81732
- RefSeq:   NP_296561.1
- ProteinModelPortal:   Q9PLC2
- SMR:   Q9PLC2
- GeneID:   1246308
- GenomeReviews:   AE002160_GR
- KEGG:   cmu:TC0182
- TIGR:   TC_0182
- HOGENOM:   HBG731986
- OMA:   IRCINAV
- ProtClustDB:   PRK05618
- BioCyc:   CMUR243161:TC_0182-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01334
- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- Gene3D:   G3DSA:2.40.240.10
- Gene3D:   G3DSA:2.170.120.20
- ProDom:   PD012503
- TIGRFAMs:   TIGR00731

Pfam domain/function: PF01386 Ribosomal_L25p; SSF50715 Ribosomal_L25rel

EC number: NA

Molecular weight: Translated: 20666; Mature: 20666

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELVVQSRETDKKSVIKKIRQQGGIPAVLYSGGKSLANVVIDARVFNKFLSTLESGALAS
CCEEECCCCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
TVFTLSYEGREIKALVKDIQYHVTTYDVIHLDFEELVEDREVRLNIPIRCINTVDCVGVK
EEEEEEECCHHHHHHHHHHHHHHEEEEEEECCHHHHHCCCCEEEECCEEEECCHHEEEEE
LGGSLRQVIRYMRVVCKPKDIVPFLELDVQSLGLSQTLKLSDIRIPEGIKPVTPLKEVAV
ECHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHH
TVARR
HHCCC
>Mature Secondary Structure
MELVVQSRETDKKSVIKKIRQQGGIPAVLYSGGKSLANVVIDARVFNKFLSTLESGALAS
CCEEECCCCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
TVFTLSYEGREIKALVKDIQYHVTTYDVIHLDFEELVEDREVRLNIPIRCINTVDCVGVK
EEEEEEECCHHHHHHHHHHHHHHEEEEEEECCHHHHHCCCCEEEECCEEEECCHHEEEEE
LGGSLRQVIRYMRVVCKPKDIVPFLELDVQSLGLSQTLKLSDIRIPEGIKPVTPLKEVAV
ECHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHH
TVARR
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10684935