| Definition | Chlamydia muridarum Nigg, complete genome. |
|---|---|
| Accession | NC_002620 |
| Length | 1,072,950 |
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The map label for this gene is murC/ddlA
Identifier: 15834763
GI number: 15834763
Start: 174426
End: 176927
Strand: Direct
Name: murC/ddlA
Synonym: TC0143
Alternate gene names: 15834763
Gene position: 174426-176927 (Clockwise)
Preceding gene: 15834762
Following gene: 15834766
Centisome position: 16.26
GC content: 40.81
Gene sequence:
>2502_bases GTGAAAATAGGCGCAAAGCTATGCTGGATGCTCAAAAGAACAAATCCTTCAAATCATTATATCAGTTTATCTGCGAATCT CTATAGGCTAACGATGAAAAGCTTGTGTTACCACTTCATTGGTATTGGTGGGATCGGAATGAGTGCTTTAGCTCATATTC TGCTTGACCGAGGATATAGCGTATCAGGGAGTGACCTTTCTGAAGGGAAAATAGTGGAAACGTTAAAAAATAAAGGCGTG AAGTTCTTCTTAGGAAATCAAGAAGAGCATGTCCCGGAAGAATCGGTAGTTGTATATGGTTCTGGAATTTCTAAAAACAA TCCTGAATTTTTAGCTGCTCTGAATAAAGGAAACCGTCTTATTCATAGGGCTGAATTATTAGCAGAGCTTACAAAAGAGC AAATTTCTATCTTTGTCACAGGAAGTCATGGAAAGACAACGGTTTCTTCTTTAATTACAGTCATCTTGCAAGAAGCTGGG AAAACCCCTTCTTTTGCGATAGGAGGGTTAAATGGAGAAGGGATCAATGGGAGTTCAGGATCTGAGTATTTTGTTGCAGA AGCCGATGAAAGCGACGGATCTATTCGGAATTATTCACCAGAATTTTCTGTAATTACCAATATAGACGACGAGCATCTGT CTAATTTTGGTGGAGATCGGGAGCGTTTGCTTGCATCTTTACAAGATTTTTCTACCAAAACTCGTCAGATTTGTTGGTAC AATGGAGATTGCTCTCGATTGCGGTCTTGCTTGGTAGGACATACATTTGGATTTACCTCTTCTTGTGATTTACATATTTT AACTTATCGACAAGAGGGGTGGAGATCGTTCTTTACAGTAAGGTATCAGAACGTTTTATACGAGGATGTGGAAGTACGGT TGGTCGGTGAGCATAATGTGATGAATGCTGCGGCAGCTATGGGAGTAGCTTTGTCATTAGGAATAGACGAAGATACGATT AGGGATGCTTTGCAGAGATTCCCAGGGGTTCAACGACGATTACAGAGGAAGAATTCTTCAGAGGTCTTTCTTTTCTTAGA AGATTATGCGCACCATCCTTCTGAGATTGCCTGTACATTGCAAGCTGTTCGCTCTGCCGTGGGATCACGACGCGTTTTAG CCATTTGTCAGCCTCACCGATTTTCTCGTTTAAAAGAGTGTATGGGATGTTTCCCTTCGGCATTCAAAGGTGCTGATGAG GTGTTATTAACAGATGTGTACAGTGCAGGAGAGGCAGAGGAAGATGTCTCTTATAAAGAGTTAGCTCAGTCTATTAGTCG GGAGTCTTTGGTAACATGTGCCTATGTTCCTTTTAGTGAGTTACAGGGCTTTTTAGAAAAGCATATTCGTGTGCATGATG TTTGCGTGGCATTAGGTGCTGGTGATATCGAGGTTTTAGGTGAGAGCTTACGAGATTTTGAACCGAAGAAACTCTCTCTA GGACTTATTTGTGGTGGAAGATCTTGTGAACATGATATTTCTATTCTATCTGCACAAAATATCGCAAAGTATCTTTCGCA TTCGTTTTATGAGGTACAGTATTTCTTAATTACCCGTGAGGGGTTATGGAAGACTGGTTCTTCACTAGAATTGTCAGAGG AGACAGGAAAAACCATTTTTGATCCAGAGATAGCAGGAAAATTAAGTAAGGTAGATGTCATTTTACCGATATTGCATGGC CCTTATGGTGAAGATGGGGCTATGCAGGGGTTTTTAGAGACTATTGGGAAGCCCTATACGGGGCCTTCTTTAGTTTTTGC TGCAATAGGAATGAATAAAGTGTTAACCAAGCGTTTTATGAGCGATTTAGGTATTCCTGTTGTGCCTTATCTCCCTCTGA CATTAAAGGGATGGAAGCAAGATCAAGAGAAATGTTTAGCTCAGATAAAGGCGGCTTTTTCATTCCCAATGTTTGTGAAG TCTGTGCATTTGGGATCTAGTATTGGCGTTTTTGAAGTTCATGATACTAATGAGTTGCGAGATGCAATTAATGAAGCCTT TGTTCGAGATGATGACGTTTTTATAGAAGAAAGTCGTTTGGGATGTAGGGAAATAGAGGTTTCTTTTTTGGGCGATGGAT CTGGAGTCTTTTTTGTTGCAGGAATGCATGAAAGACGAGGCAGAGGCGGGTTTATTGATTATCAAGAAAAGTATGGGCTA AGTGGTAGGGCTAGTGCTCAGATCGTATTTGATGTAGATCTTTCTAAAGAAACGAGAGAACAATTGCTTGGAGTTGCAGA GAAAATTTATCGTCTATTACAAGGAAAGGGGTCTTGTCGTATTGACTTTTTTGTCGATAATGAAGGGAGCTTTTGGTTAT CAGAAATCAATCCTATTCCTGGTATGACAACAGCAAGCCCCTTCCTTGCTGCTTTTGTTCGTAAGGGCTGGAATCGCGAA CAAATTGTGCATCAACTTGTTATAGATGGATTACAACGATTCGACCAACGCCAACGCTTGATATCGACACCTTTAATAGA TCAAGCGTTGGCTGCTCGGTAA
Upstream 100 bases:
>100_bases TTCACACAAACTCTTGGTGGTGGGACCATGATTTTGCAAAAGCATTTGACAGAAGAAAGTTTACGTAAGCAGGTTTTGCT TGCTTTAGATCCAGCAACTA
Downstream 100 bases:
>100_bases GAAGATTCCTGTGTAAGGCAATCGAACTAACTATGATGAGAGCAATTACAGCCATGGCATGTGCCCGCTAAAGTACTGAC AGCAACTGAGGATTCTTCTT
Product: bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase
Products: NA
Alternate protein names: UDP-N-acetylmuramate--L-alanine ligase; UDP-N-acetylmuramoyl-L-alanine synthetase; D-alanine--D-alanine ligase; D-Ala-D-Ala ligase; D-alanylalanine synthetase [H]
Number of amino acids: Translated: 833; Mature: 833
Protein sequence:
>833_residues MKIGAKLCWMLKRTNPSNHYISLSANLYRLTMKSLCYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKIVETLKNKGV KFFLGNQEEHVPEESVVVYGSGISKNNPEFLAALNKGNRLIHRAELLAELTKEQISIFVTGSHGKTTVSSLITVILQEAG KTPSFAIGGLNGEGINGSSGSEYFVAEADESDGSIRNYSPEFSVITNIDDEHLSNFGGDRERLLASLQDFSTKTRQICWY NGDCSRLRSCLVGHTFGFTSSCDLHILTYRQEGWRSFFTVRYQNVLYEDVEVRLVGEHNVMNAAAAMGVALSLGIDEDTI RDALQRFPGVQRRLQRKNSSEVFLFLEDYAHHPSEIACTLQAVRSAVGSRRVLAICQPHRFSRLKECMGCFPSAFKGADE VLLTDVYSAGEAEEDVSYKELAQSISRESLVTCAYVPFSELQGFLEKHIRVHDVCVALGAGDIEVLGESLRDFEPKKLSL GLICGGRSCEHDISILSAQNIAKYLSHSFYEVQYFLITREGLWKTGSSLELSEETGKTIFDPEIAGKLSKVDVILPILHG PYGEDGAMQGFLETIGKPYTGPSLVFAAIGMNKVLTKRFMSDLGIPVVPYLPLTLKGWKQDQEKCLAQIKAAFSFPMFVK SVHLGSSIGVFEVHDTNELRDAINEAFVRDDDVFIEESRLGCREIEVSFLGDGSGVFFVAGMHERRGRGGFIDYQEKYGL SGRASAQIVFDVDLSKETREQLLGVAEKIYRLLQGKGSCRIDFFVDNEGSFWLSEINPIPGMTTASPFLAAFVRKGWNRE QIVHQLVIDGLQRFDQRQRLISTPLIDQALAAR
Sequences:
>Translated_833_residues MKIGAKLCWMLKRTNPSNHYISLSANLYRLTMKSLCYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKIVETLKNKGV KFFLGNQEEHVPEESVVVYGSGISKNNPEFLAALNKGNRLIHRAELLAELTKEQISIFVTGSHGKTTVSSLITVILQEAG KTPSFAIGGLNGEGINGSSGSEYFVAEADESDGSIRNYSPEFSVITNIDDEHLSNFGGDRERLLASLQDFSTKTRQICWY NGDCSRLRSCLVGHTFGFTSSCDLHILTYRQEGWRSFFTVRYQNVLYEDVEVRLVGEHNVMNAAAAMGVALSLGIDEDTI RDALQRFPGVQRRLQRKNSSEVFLFLEDYAHHPSEIACTLQAVRSAVGSRRVLAICQPHRFSRLKECMGCFPSAFKGADE VLLTDVYSAGEAEEDVSYKELAQSISRESLVTCAYVPFSELQGFLEKHIRVHDVCVALGAGDIEVLGESLRDFEPKKLSL GLICGGRSCEHDISILSAQNIAKYLSHSFYEVQYFLITREGLWKTGSSLELSEETGKTIFDPEIAGKLSKVDVILPILHG PYGEDGAMQGFLETIGKPYTGPSLVFAAIGMNKVLTKRFMSDLGIPVVPYLPLTLKGWKQDQEKCLAQIKAAFSFPMFVK SVHLGSSIGVFEVHDTNELRDAINEAFVRDDDVFIEESRLGCREIEVSFLGDGSGVFFVAGMHERRGRGGFIDYQEKYGL SGRASAQIVFDVDLSKETREQLLGVAEKIYRLLQGKGSCRIDFFVDNEGSFWLSEINPIPGMTTASPFLAAFVRKGWNRE QIVHQLVIDGLQRFDQRQRLISTPLIDQALAAR >Mature_833_residues MKIGAKLCWMLKRTNPSNHYISLSANLYRLTMKSLCYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKIVETLKNKGV KFFLGNQEEHVPEESVVVYGSGISKNNPEFLAALNKGNRLIHRAELLAELTKEQISIFVTGSHGKTTVSSLITVILQEAG KTPSFAIGGLNGEGINGSSGSEYFVAEADESDGSIRNYSPEFSVITNIDDEHLSNFGGDRERLLASLQDFSTKTRQICWY NGDCSRLRSCLVGHTFGFTSSCDLHILTYRQEGWRSFFTVRYQNVLYEDVEVRLVGEHNVMNAAAAMGVALSLGIDEDTI RDALQRFPGVQRRLQRKNSSEVFLFLEDYAHHPSEIACTLQAVRSAVGSRRVLAICQPHRFSRLKECMGCFPSAFKGADE VLLTDVYSAGEAEEDVSYKELAQSISRESLVTCAYVPFSELQGFLEKHIRVHDVCVALGAGDIEVLGESLRDFEPKKLSL GLICGGRSCEHDISILSAQNIAKYLSHSFYEVQYFLITREGLWKTGSSLELSEETGKTIFDPEIAGKLSKVDVILPILHG PYGEDGAMQGFLETIGKPYTGPSLVFAAIGMNKVLTKRFMSDLGIPVVPYLPLTLKGWKQDQEKCLAQIKAAFSFPMFVK SVHLGSSIGVFEVHDTNELRDAINEAFVRDDDVFIEESRLGCREIEVSFLGDGSGVFFVAGMHERRGRGGFIDYQEKYGL SGRASAQIVFDVDLSKETREQLLGVAEKIYRLLQGKGSCRIDFFVDNEGSFWLSEINPIPGMTTASPFLAAFVRKGWNRE QIVHQLVIDGLQRFDQRQRLISTPLIDQALAAR
Specific function: Cell wall formation [H]
COG id: COG0773
COG function: function code M; UDP-N-acetylmuramate-alanine ligase
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ATP-grasp domain [H]
Homologues:
Organism=Escherichia coli, GI1786279, Length=459, Percent_Identity=33.5511982570806, Blast_Score=200, Evalue=3e-52, Organism=Escherichia coli, GI1786579, Length=370, Percent_Identity=28.6486486486486, Blast_Score=159, Evalue=9e-40, Organism=Escherichia coli, GI1790680, Length=391, Percent_Identity=27.3657289002558, Blast_Score=130, Evalue=3e-31, Organism=Escherichia coli, GI1786280, Length=251, Percent_Identity=35.0597609561753, Blast_Score=122, Evalue=1e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011761 - InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR000291 - InterPro: IPR005905 - InterPro: IPR011095 - InterPro: IPR011127 - InterPro: IPR004101 - InterPro: IPR013221 - InterPro: IPR000713 - InterPro: IPR016040 - InterPro: IPR013817 - InterPro: IPR016185 - InterPro: IPR005758 [H]
Pfam domain/function: PF07478 Dala_Dala_lig_C; PF01820 Dala_Dala_lig_N; PF01225 Mur_ligase; PF02875 Mur_ligase_C; PF08245 Mur_ligase_M [H]
EC number: =6.3.2.8; =6.3.2.4 [H]
Molecular weight: Translated: 92351; Mature: 92351
Theoretical pI: Translated: 6.06; Mature: 6.06
Prosite motif: PS50975 ATP_GRASP ; PS00843 DALA_DALA_LIGASE_1 ; PS00844 DALA_DALA_LIGASE_2 ; PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIGAKLCWMLKRTNPSNHYISLSANLYRLTMKSLCYHFIGIGGIGMSALAHILLDRGYS CCCCHHHHHHEECCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC VSGSDLSEGKIVETLKNKGVKFFLGNQEEHVPEESVVVYGSGISKNNPEFLAALNKGNRL CCCCCCCCCHHHHHHHHCCEEEEECCCHHCCCCCCEEEEECCCCCCCCHHEEEECCCCHH IHRAELLAELTKEQISIFVTGSHGKTTVSSLITVILQEAGKTPSFAIGGLNGEGINGSSG HHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCC SEYFVAEADESDGSIRNYSPEFSVITNIDDEHLSNFGGDRERLLASLQDFSTKTRQICWY CEEEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEE NGDCSRLRSCLVGHTFGFTSSCDLHILTYRQEGWRSFFTVRYQNVLYEDVEVRLVGEHNV CCCHHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHEECEEEEEECCCCH MNAAAAMGVALSLGIDEDTIRDALQRFPGVQRRLQRKNSSEVFLFLEDYAHHPSEIACTL HHHHHHHHHHEEECCCHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEECCCCCCHHHHHHH QAVRSAVGSRRVLAICQPHRFSRLKECMGCFPSAFKGADEVLLTDVYSAGEAEEDVSYKE HHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHCCCCCCCCCHHH LAQSISRESLVTCAYVPFSELQGFLEKHIRVHDVCVALGAGDIEVLGESLRDFEPKKLSL HHHHHCHHHEEEEEECCHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHCCCCCEEEE GLICGGRSCEHDISILSAQNIAKYLSHSFYEVQYFLITREGLWKTGSSLELSEETGKTIF EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCEEHHHCCCEEE DPEIAGKLSKVDVILPILHGPYGEDGAMQGFLETIGKPYTGPSLVFAAIGMNKVLTKRFM CHHHHCCHHHHEEEEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHHHH SDLGIPVVPYLPLTLKGWKQDQEKCLAQIKAAFSFPMFVKSVHLGSSIGVFEVHDTNELR HHCCCCEECCCCCEECCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCHHHH DAINEAFVRDDDVFIEESRLGCREIEVSFLGDGSGVFFVAGMHERRGRGGFIDYQEKYGL HHHHHHHCCCCCEEEECCCCCCEEEEEEEEECCCCEEEEEECHHCCCCCCCCCCHHHCCC SGRASAQIVFDVDLSKETREQLLGVAEKIYRLLQGKGSCRIDFFVDNEGSFWLSEINPIP CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEECCCCCC GMTTASPFLAAFVRKGWNREQIVHQLVIDGLQRFDQRQRLISTPLIDQALAAR CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC >Mature Secondary Structure MKIGAKLCWMLKRTNPSNHYISLSANLYRLTMKSLCYHFIGIGGIGMSALAHILLDRGYS CCCCHHHHHHEECCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC VSGSDLSEGKIVETLKNKGVKFFLGNQEEHVPEESVVVYGSGISKNNPEFLAALNKGNRL CCCCCCCCCHHHHHHHHCCEEEEECCCHHCCCCCCEEEEECCCCCCCCHHEEEECCCCHH IHRAELLAELTKEQISIFVTGSHGKTTVSSLITVILQEAGKTPSFAIGGLNGEGINGSSG HHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCC SEYFVAEADESDGSIRNYSPEFSVITNIDDEHLSNFGGDRERLLASLQDFSTKTRQICWY CEEEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEE NGDCSRLRSCLVGHTFGFTSSCDLHILTYRQEGWRSFFTVRYQNVLYEDVEVRLVGEHNV CCCHHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHEECEEEEEECCCCH MNAAAAMGVALSLGIDEDTIRDALQRFPGVQRRLQRKNSSEVFLFLEDYAHHPSEIACTL HHHHHHHHHHEEECCCHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEECCCCCCHHHHHHH QAVRSAVGSRRVLAICQPHRFSRLKECMGCFPSAFKGADEVLLTDVYSAGEAEEDVSYKE HHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHCCCCCCCCCHHH LAQSISRESLVTCAYVPFSELQGFLEKHIRVHDVCVALGAGDIEVLGESLRDFEPKKLSL HHHHHCHHHEEEEEECCHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHCCCCCEEEE GLICGGRSCEHDISILSAQNIAKYLSHSFYEVQYFLITREGLWKTGSSLELSEETGKTIF EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCEEHHHCCCEEE DPEIAGKLSKVDVILPILHGPYGEDGAMQGFLETIGKPYTGPSLVFAAIGMNKVLTKRFM CHHHHCCHHHHEEEEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHHHH SDLGIPVVPYLPLTLKGWKQDQEKCLAQIKAAFSFPMFVKSVHLGSSIGVFEVHDTNELR HHCCCCEECCCCCEECCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCHHHH DAINEAFVRDDDVFIEESRLGCREIEVSFLGDGSGVFFVAGMHERRGRGGFIDYQEKYGL HHHHHHHCCCCCEEEECCCCCCEEEEEEEEECCCCEEEEEECHHCCCCCCCCCCHHHCCC SGRASAQIVFDVDLSKETREQLLGVAEKIYRLLQGKGSCRIDFFVDNEGSFWLSEINPIP CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEECCCCCC GMTTASPFLAAFVRKGWNREQIVHQLVIDGLQRFDQRQRLISTPLIDQALAAR CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10684935 [H]