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The map label for this gene is hctA

Identifier: 15834743

GI number: 15834743

Start: 142521

End: 142898

Strand: Reverse

Name: hctA

Synonym: TC0119

Alternate gene names: 15834743

Gene position: 142898-142521 (Counterclockwise)

Preceding gene: 15834745

Following gene: 15834742

Centisome position: 13.32

GC content: 35.71

Gene sequence:

>378_bases
ATGGCGCTAAAAGATACGGCAAAAAAAATGACAGATTTGTTGGAAAGTATCCAACAAAACTTGCTAAAAGCGGAAAAAGG
GAATAAAGCCGCAGCACAGCGAGTTCGTACTGAATCCATCAAATTAGAAAAAATTGCGAAAGTTTATCGCAAAGAGTCCA
TTAAAGCAGAAAAAATGGGCTTGATGAAAAGAAGTAAAGTAGCTGCTAAAAAAGCTAAAGCTGCTGCTAAAAAACCTGCC
AAAGCCACTAAAGTTGTAACGAAAAAAGCTTGTACAAAAAAAACTTGCGCTACTAAGGCAAAAGCTAAACCAGTAAAAAA
AGCCGCTACTAAAACGAAAGCTAAAGTGACGAAAAAAGTTCGTTCAACAAAAAAATAA

Upstream 100 bases:

>100_bases
TAGATTCTAGAAAATGGTTGCATGAATTTGAACAAACAAACTAATTAAAAATTAAAACTAAAAAAAATAGTTTAAAACAA
CGACTAGAGGATATTTTTTC

Downstream 100 bases:

>100_bases
ACTCTTAGCGCTTTCTTTTTTTGTAGAGGGCACTTTTAATCAACAGGGCCCTCTTTTCTCTTCTCATTGATTGCTTCTCT
TTTTTTTGCTATCCTTCCTG

Product: histone H1-like protein HC1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MALKDTAKKMTDLLESIQQNLLKAEKGNKAAAQRVRTESIKLEKIAKVYRKESIKAEKMGLMKRSKVAAKKAKAAAKKPA
KATKVVTKKACTKKTCATKAKAKPVKKAATKTKAKVTKKVRSTKK

Sequences:

>Translated_125_residues
MALKDTAKKMTDLLESIQQNLLKAEKGNKAAAQRVRTESIKLEKIAKVYRKESIKAEKMGLMKRSKVAAKKAKAAAKKPA
KATKVVTKKACTKKTCATKAKAKPVKKAATKTKAKVTKKVRSTKK
>Mature_124_residues
ALKDTAKKMTDLLESIQQNLLKAEKGNKAAAQRVRTESIKLEKIAKVYRKESIKAEKMGLMKRSKVAAKKAKAAAKKPAK
ATKVVTKKACTKKTCATKAKAKPVKKAATKTKAKVTKKVRSTKK

Specific function: Might have a role analogous to that of eukaryotic histone proteins

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the histone H1/H5 family. HCT subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): HCT1_CHLMU (Q9PLI1)

Other databases:

- EMBL:   AE002160
- PIR:   B81739
- RefSeq:   NP_296502.1
- GeneID:   1245653
- GenomeReviews:   AE002160_GR
- KEGG:   cmu:TC0119
- TIGR:   TC_0119
- OMA:   RTDSIKL
- ProtClustDB:   CLSK871574
- BioCyc:   CMUR243161:TC_0119-MONOMER
- InterPro:   IPR010886

Pfam domain/function: PF07432 Hc1

EC number: NA

Molecular weight: Translated: 13683; Mature: 13552

Theoretical pI: Translated: 11.41; Mature: 11.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALKDTAKKMTDLLESIQQNLLKAEKGNKAAAQRVRTESIKLEKIAKVYRKESIKAEKMG
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMKRSKVAAKKAKAAAKKPAKATKVVTKKACTKKTCATKAKAKPVKKAATKTKAKVTKKV
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSTKK
HHCCC
>Mature Secondary Structure 
ALKDTAKKMTDLLESIQQNLLKAEKGNKAAAQRVRTESIKLEKIAKVYRKESIKAEKMG
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMKRSKVAAKKAKAAAKKPAKATKVVTKKACTKKTCATKAKAKPVKKAATKTKAKVTKKV
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSTKK
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10684935