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The map label for this gene is sctC

Identifier: 15834670

GI number: 15834670

Start: 51020

End: 53038

Strand: Direct

Name: sctC

Synonym: TC0045

Alternate gene names: 15834670

Gene position: 51020-53038 (Clockwise)

Preceding gene: 15834669

Following gene: 15834678

Centisome position: 4.76

GC content: 40.32

Gene sequence:

>2019_bases
TTGAACAAGAATTCTCTTACTTGTCAGGATTTGAAAGAAGTTGGCTATACCGTCAATTTTGAAGACATTTCTATTTTGGA
ATTGCTGCAGTTTGTAAGTAAGATTTCCGGAACAAATTTCGTTTTTGATAGCAATGACTTGCAATTCAATGTAACGATAG
TTTCTCACGATCCTACTTCGGTGGATGATTTAGCAACGATTCTATTGCAAGTTTTGAAGATGCATGACTTGAAAGTCATG
GAGCAGGGGAATAACGTATTAATTTATCGCAATCCGAAGCTTTCACAACTGTCAACAGTAGTGACTGATGGCTCTGCCAA
AGATACTAGTGAAGCAGTAGTGGTTACACGAGTATTTCGTTTGTATAGCGTAAGTCCTTCTGCTGCGGTAGAAATTATTC
AGCCGTTACTTTCCCATGATGCGATTATTAGTGCTTCCGAGTCCACTAGACATATTATCGTTTCGGATATAGCAGGAAAT
ATCGAAAAAGTTCGAGAGTTGATACAGGCATTAGATAGCCCTGGAGCGTCTATTGATATGTCTGAGTATGAAGTGCAGTT
TGCTAATCCTGCTGCATTAGTTAGCTATTGTCAGGATGTCCTTGGAGCAATGACGGAAGAAGAGGGCTTCCAAATTTTTA
TTCAGCCAGGGACGAATAAAATTTTTGTTATTTCATCTCCAAGATTAACAACGAAAGCGATCCAATTATTACAATCTTTA
GATATCCCAGAAATGGCGCATACATTGGATGATGTGACGAGCCCTGCGTCTGCTTTGGGTAGCTCTGGATCCGCTAATCC
TAAGAGCATGCGCTTTTTCATGTATAAATTGAAATATCAGGATGGATCAGCTATTGCTCAAGCGATCCAGGATATTGGGT
ATAACCTTTATGTGACAACGGCGATGGATGAAGATTTCATCAACACGTTGAACACGATTCAATGGTTGCCTATTAACAAT
TCTATCGTTGTGATCGGAAATCAGGCTAATGTGGATAAGGTTGTTAGTCTGTTGAACGGATTAGATCTTCCTCCAAAACA
AGTGTATATTGAAGTTCTCATTTTAGAGACGAGTTTAGAAAAATCTTGGGACTTTGGGGTGCAATGGGCAGCTCTTGGAG
ATGAACAAGGAAAAGTAGCTTATGCTTCTGGTTTGTTGAGTAACACAGGAGTGGTGGATCCTTTGCGTAATCAGACTCCT
CCCGTTGCTCCAAACCCAGGGAATATCTCGTTGCCAACTCCAGGTCAATTAGCTGGCATCAGTGATATGATGTATGGATC
TTCTGCATTTGGATTAGGAATTATTGGGAATGTTCTCAGTCATAATGGGAAGTCTTATCTAACGTTAGGAGGATTACTAA
GTGCCCTAGACCAAGATGGTGATACAACAGTGGTGCTTAATCCAAGAATTATGGCGCAAGATACGCAGCAAGCGTCCTTC
TTTGTAGGCCAGACAATTCCTTTCCAAACAACGAGTACGGTTATCCAGGAAACTGGCTCTGTTACACAAAATATTGAATA
CGAAGATATCGGAGTGAATCTGGTCGTAACATCAACTATTGCTCCTAATAATGTCGTTACTTTGCAGATCGAGCAAACGA
TTTCTGAATTGCATTCAGCGCAAGGAGTTCTCACTCCTGTAACGGATAAAACGTTTGCTGCTACAAGATTACAAGTTCCT
GACGGATGTTTCCTTGTTATGAGTGGGCATATTCGAGATAAACTCACAAAAATTGTTTCTGGGGTGCCATTACTCAGTTC
TCTTCCTCTAATCAAAGGACTCTTTAGCCGAACAATCGATCAGCGCCAAAAGCGCAATATTATGATTTTCATTAAGCCAA
AAGTCATTAGTAGCTTTGAGGAAGGAACAGTCTTATCCAACTCGGAAGGATATCGTTATAATTGGGAAAGTGAAAGAGGA
TCTTTAGAAGTTGCTCCTCGTCATGCTCCCGAATGTCAGAATGCTCCTAAGGTTCAGACAGAAAGTGATTTTAAAATGCT
AGAAATAGAAGCAGAATAA

Upstream 100 bases:

>100_bases
ATCTGGAAGAAAAGATCCAAACACATCCGAGGATCTTTCCATTAAAACGATACAAGATAGCTCCCATGACCAAGATGAAG
AGAAAAAAGTTCTGGAGCGA

Downstream 100 bases:

>100_bases
TGATATAAAGGTTGCAAGTTGGTATTCTAACGCCATGGAATAGCTTCTGACTCTGGTGTTTGTTGCACAGGGGGAAGCCA
AGATGGGCTGGAGTTAGCCG

Product: type III secretion protein SctC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 672; Mature: 672

Protein sequence:

>672_residues
MNKNSLTCQDLKEVGYTVNFEDISILELLQFVSKISGTNFVFDSNDLQFNVTIVSHDPTSVDDLATILLQVLKMHDLKVM
EQGNNVLIYRNPKLSQLSTVVTDGSAKDTSEAVVVTRVFRLYSVSPSAAVEIIQPLLSHDAIISASESTRHIIVSDIAGN
IEKVRELIQALDSPGASIDMSEYEVQFANPAALVSYCQDVLGAMTEEEGFQIFIQPGTNKIFVISSPRLTTKAIQLLQSL
DIPEMAHTLDDVTSPASALGSSGSANPKSMRFFMYKLKYQDGSAIAQAIQDIGYNLYVTTAMDEDFINTLNTIQWLPINN
SIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQGKVAYASGLLSNTGVVDPLRNQTP
PVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGNVLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASF
FVGQTIPFQTTSTVIQETGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLTPVTDKTFAATRLQVP
DGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRTIDQRQKRNIMIFIKPKVISSFEEGTVLSNSEGYRYNWESERG
SLEVAPRHAPECQNAPKVQTESDFKMLEIEAE

Sequences:

>Translated_672_residues
MNKNSLTCQDLKEVGYTVNFEDISILELLQFVSKISGTNFVFDSNDLQFNVTIVSHDPTSVDDLATILLQVLKMHDLKVM
EQGNNVLIYRNPKLSQLSTVVTDGSAKDTSEAVVVTRVFRLYSVSPSAAVEIIQPLLSHDAIISASESTRHIIVSDIAGN
IEKVRELIQALDSPGASIDMSEYEVQFANPAALVSYCQDVLGAMTEEEGFQIFIQPGTNKIFVISSPRLTTKAIQLLQSL
DIPEMAHTLDDVTSPASALGSSGSANPKSMRFFMYKLKYQDGSAIAQAIQDIGYNLYVTTAMDEDFINTLNTIQWLPINN
SIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQGKVAYASGLLSNTGVVDPLRNQTP
PVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGNVLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASF
FVGQTIPFQTTSTVIQETGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLTPVTDKTFAATRLQVP
DGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRTIDQRQKRNIMIFIKPKVISSFEEGTVLSNSEGYRYNWESERG
SLEVAPRHAPECQNAPKVQTESDFKMLEIEAE
>Mature_672_residues
MNKNSLTCQDLKEVGYTVNFEDISILELLQFVSKISGTNFVFDSNDLQFNVTIVSHDPTSVDDLATILLQVLKMHDLKVM
EQGNNVLIYRNPKLSQLSTVVTDGSAKDTSEAVVVTRVFRLYSVSPSAAVEIIQPLLSHDAIISASESTRHIIVSDIAGN
IEKVRELIQALDSPGASIDMSEYEVQFANPAALVSYCQDVLGAMTEEEGFQIFIQPGTNKIFVISSPRLTTKAIQLLQSL
DIPEMAHTLDDVTSPASALGSSGSANPKSMRFFMYKLKYQDGSAIAQAIQDIGYNLYVTTAMDEDFINTLNTIQWLPINN
SIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQGKVAYASGLLSNTGVVDPLRNQTP
PVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGNVLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASF
FVGQTIPFQTTSTVIQETGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLTPVTDKTFAATRLQVP
DGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRTIDQRQKRNIMIFIKPKVISSFEEGTVLSNSEGYRYNWESERG
SLEVAPRHAPECQNAPKVQTESDFKMLEIEAE

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=658, Percent_Identity=23.8601823708207, Blast_Score=119, Evalue=5e-28,
Organism=Escherichia coli, GI1789793, Length=172, Percent_Identity=28.4883720930233, Blast_Score=67, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 73134; Mature: 73134

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKNSLTCQDLKEVGYTVNFEDISILELLQFVSKISGTNFVFDSNDLQFNVTIVSHDPTS
CCCCCCCHHHHHHCCCEECCCCCHHHHHHHHHHHCCCCEEEEECCCEEEEEEEEECCCCC
VDDLATILLQVLKMHDLKVMEQGNNVLIYRNPKLSQLSTVVTDGSAKDTSEAVVVTRVFR
HHHHHHHHHHHHHHHCHHHEECCCCEEEEECCCHHHHHHEEECCCCCCCCHHHHHHHHHH
LYSVSPSAAVEIIQPLLSHDAIISASESTRHIIVSDIAGNIEKVRELIQALDSPGASIDM
HHCCCHHHHHHHHHHHHCCCCEEECCCCCCEEEEEHHCCCHHHHHHHHHHHCCCCCEEEC
SEYEVQFANPAALVSYCQDVLGAMTEEEGFQIFIQPGTNKIFVISSPRLTTKAIQLLQSL
CCEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHC
DIPEMAHTLDDVTSPASALGSSGSANPKSMRFFMYKLKYQDGSAIAQAIQDIGYNLYVTT
CCHHHHHHHHHHCCCHHHHCCCCCCCCHHEEEEEEEEEECCCHHHHHHHHHCCCEEEEEE
AMDEDFINTLNTIQWLPINNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLE
ECCHHHHHHHHCEEEEECCCEEEEEECCCCHHHHHHHHHCCCCCCHHEEEEEEEEEECCC
KSWDFGVQWAALGDEQGKVAYASGLLSNTGVVDPLRNQTPPVAPNPGNISLPTPGQLAGI
CCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SDMMYGSSAFGLGIIGNVLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASF
HHHHCCCCCCCHHHHHHHHHCCCCCEEEHHHHHHHHCCCCCEEEEECCEEEECCCCCCEE
FVGQTIPFQTTSTVIQETGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSA
EECCCCCCCHHHHHHHHCCCHHCCCEEECCCEEEEEEEEECCCCEEEEEEHHHHHHHHHC
QGVLTPVTDKTFAATRLQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRTID
CCCEECCCCCCEEEEEEECCCCEEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
QRQKRNIMIFIKPKVISSFEEGTVLSNSEGYRYNWESERGSLEVAPRHAPECQNAPKVQT
HHHCCCEEEEEECHHHCCCCCCCEEECCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCC
ESDFKMLEIEAE
CCCCEEEEEECC
>Mature Secondary Structure
MNKNSLTCQDLKEVGYTVNFEDISILELLQFVSKISGTNFVFDSNDLQFNVTIVSHDPTS
CCCCCCCHHHHHHCCCEECCCCCHHHHHHHHHHHCCCCEEEEECCCEEEEEEEEECCCCC
VDDLATILLQVLKMHDLKVMEQGNNVLIYRNPKLSQLSTVVTDGSAKDTSEAVVVTRVFR
HHHHHHHHHHHHHHHCHHHEECCCCEEEEECCCHHHHHHEEECCCCCCCCHHHHHHHHHH
LYSVSPSAAVEIIQPLLSHDAIISASESTRHIIVSDIAGNIEKVRELIQALDSPGASIDM
HHCCCHHHHHHHHHHHHCCCCEEECCCCCCEEEEEHHCCCHHHHHHHHHHHCCCCCEEEC
SEYEVQFANPAALVSYCQDVLGAMTEEEGFQIFIQPGTNKIFVISSPRLTTKAIQLLQSL
CCEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHC
DIPEMAHTLDDVTSPASALGSSGSANPKSMRFFMYKLKYQDGSAIAQAIQDIGYNLYVTT
CCHHHHHHHHHHCCCHHHHCCCCCCCCHHEEEEEEEEEECCCHHHHHHHHHCCCEEEEEE
AMDEDFINTLNTIQWLPINNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLE
ECCHHHHHHHHCEEEEECCCEEEEEECCCCHHHHHHHHHCCCCCCHHEEEEEEEEEECCC
KSWDFGVQWAALGDEQGKVAYASGLLSNTGVVDPLRNQTPPVAPNPGNISLPTPGQLAGI
CCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SDMMYGSSAFGLGIIGNVLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASF
HHHHCCCCCCCHHHHHHHHHCCCCCEEEHHHHHHHHCCCCCEEEEECCEEEECCCCCCEE
FVGQTIPFQTTSTVIQETGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSA
EECCCCCCCHHHHHHHHCCCHHCCCEEECCCEEEEEEEEECCCCEEEEEEHHHHHHHHHC
QGVLTPVTDKTFAATRLQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRTID
CCCEECCCCCCEEEEEEECCCCEEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
QRQKRNIMIFIKPKVISSFEEGTVLSNSEGYRYNWESERGSLEVAPRHAPECQNAPKVQT
HHHCCCEEEEEECHHHCCCCCCCEEECCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCC
ESDFKMLEIEAE
CCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7934833; 10984043 [H]