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Identifier: 15834655

GI number: 15834655

Start: 34594

End: 34830

Strand: Direct

Name: Not Available

Synonym: TC0030

Alternate gene names: NA

Gene position: 34594-34830 (Clockwise)

Preceding gene: 15834653

Following gene: 15834658

Centisome position: 3.22

GC content: 41.77

Gene sequence:

>237_bases
ATGAAAGAGTTTTTAGCGTACATTGTAAAAAATCTTGTTGATAGGCCGGAGGAAGTGCATCTAAAAGAGGTGCAGGGAAC
GAACACGATTATCTACGAATTGACTGTTGCTAAGGGAGATATCGGTAAAATCATCGGGAAGGAAGGACGAACGATCAAAG
CAATTCGTACCTTGCTTGTCTCCGTAGCAAGCCGAGATAATGTGAAGGTCAGTCTAGAAATTATGGAAGAGCGATAA

Upstream 100 bases:

>100_bases
AGTTTTGTTTTTTAAGTAAGAAGTATAAAATTAGATTAGAATTACTATTTTATTTTTCTTTTTCACCTTCAGAAAAAAGC
TTGTGTAGGATTTGCTTCGC

Downstream 100 bases:

>100_bases
GAGCTCTTGATAGCTTTTTTGTTGCAAAAAGAGATCGATAGGCACTGTTGGCCCGGGAGGTGTGAACTCTAGGGCCCTCG
AGGGTTTATTAGACCAGAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 78; Mature: 78

Protein sequence:

>78_residues
MKEFLAYIVKNLVDRPEEVHLKEVQGTNTIIYELTVAKGDIGKIIGKEGRTIKAIRTLLVSVASRDNVKVSLEIMEER

Sequences:

>Translated_78_residues
MKEFLAYIVKNLVDRPEEVHLKEVQGTNTIIYELTVAKGDIGKIIGKEGRTIKAIRTLLVSVASRDNVKVSLEIMEER
>Mature_78_residues
MKEFLAYIVKNLVDRPEEVHLKEVQGTNTIIYELTVAKGDIGKIIGKEGRTIKAIRTLLVSVASRDNVKVSLEIMEER

Specific function: Unknown

COG id: COG1837

COG function: function code R; Predicted RNA-binding protein (contains KH domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 KH domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y030_CHLMU (Q9PLR5)

Other databases:

- EMBL:   AE002160
- PIR:   B81748
- RefSeq:   NP_296414.1
- GeneID:   1245555
- GenomeReviews:   AE002160_GR
- KEGG:   cmu:TC0030
- TIGR:   TC_0030
- HOGENOM:   HBG668070
- OMA:   QGRIARA
- ProtClustDB:   PRK01064
- BioCyc:   CMUR243161:TC_0030-MONOMER
- HAMAP:   MF_00088
- InterPro:   IPR009019
- InterPro:   IPR004088
- InterPro:   IPR018111
- InterPro:   IPR020627

Pfam domain/function: PF00013 KH_1; SSF54814 KH_prok

EC number: NA

Molecular weight: Translated: 8812; Mature: 8812

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEFLAYIVKNLVDRPEEVHLKEVQGTNTIIYELTVAKGDIGKIIGKEGRTIKAIRTLLV
CHHHHHHHHHHHHCCCCCCHHEECCCCCEEEEEEEECCCCHHHHHCCCCCCHHHHHHHHH
SVASRDNVKVSLEIMEER
HHCCCCCEEEEEEEEECC
>Mature Secondary Structure
MKEFLAYIVKNLVDRPEEVHLKEVQGTNTIIYELTVAKGDIGKIIGKEGRTIKAIRTLLV
CHHHHHHHHHHHHCCCCCCHHEECCCCCEEEEEEEECCCCHHHHHCCCCCCHHHHHHHHH
SVASRDNVKVSLEIMEER
HHCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10684935