Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 16120286

GI number: 16120286

Start: 312226

End: 313047

Strand: Reverse

Name: Not Available

Synonym: VNG6400H

Alternate gene names: NA

Gene position: 313047-312226 (Counterclockwise)

Preceding gene: 16120287

Following gene: 16120283

Centisome position: 85.67

GC content: 63.38

Gene sequence:

>822_bases
ATGGAGGTAACCGAGGACGCAGTTCGGGACATCTGCACGGACGCAGTCTTCGAACGTGGCGAACGTTATCTCGCTGATGG
GTGTATCCACGAGATTCACCGCGTCGACAGCACTGTCATAGCCGTTGTGAGCGGCAGCCGTCAGTACGATGTTCGTGTTG
ACCTCGCCACCGACGGGTTTACCCCGTGGTGCGATTGTCCGTACGACGGGCCGGGAGCGTGCAAGCACGTCGTCGCCGTG
TTGCTTCGGTGTGTCGACGACCCACCGCCAAACGAAGGCGATCGACTCGACGCCGCACTCGACGGCGTCGACGCCGACGA
ACTCCGCGCGTTCCTGCGTGACGAACTCGTGGCCGATGCGAATCTCCGCGATCGGTTTCTCGCCCGCGTCGGCGAGCCGA
CGAGACAGTCGGTCGACGAGCTTCGCACCGCGATCGATCGGCGGTTCGAAGAGACGAATCCCGAGTACCACGTCGTCTTC
GAGCCGATCGACTTCACGCAGTGGTTCGATCTCGCGAACGAGTACCGCGAACAGGGGCGGGACGCGTCGGCGGCGACCGT
CTACCGGGCACTCGTCGAGTCGCTCGACGACAACATGGAGCGCGTCGACGGCGCGTACGACCACTTCTCGCGTGCGTTCA
GTCGGGCAATCGACGAGTATGTCGACTGTGTCGCGACCGCAGAACGGGACGCTGATGCGGTCACTGACGCCGTCGCATTC
CTCGAGGAGCGGGCGACATCGGGAACGCCGTTCCTCGCGGAACACTTCGAAAAGGCAGCAGTCGAGCTTCGAGAGAAGCT
TGGCGAGCAGTCCTGCGAGTAG

Upstream 100 bases:

>100_bases
AGGTCTCACTCGTGACGCGTGCCGTCCATGCAATGTGGCGAGCAGCATACGAGACTGGGGATCTGGATCGGCTGAATAGT
GCGTCAAATCCACCATACGG

Downstream 100 bases:

>100_bases
TTGTGTCCCCTTCGATGACACCCGTATGTTCGAAGATCACGAGAATTAGTTTGCGGCGCGGTCAGCCACATTGATCCGCT
GTTCGCGAGCGGCTTCGACA

Product: hypothetical protein

Products: NA

Alternate protein names: SWIM Zinc Finger Domain-Containing Protein; SWIM Zinc Finger Domain Protein

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MEVTEDAVRDICTDAVFERGERYLADGCIHEIHRVDSTVIAVVSGSRQYDVRVDLATDGFTPWCDCPYDGPGACKHVVAV
LLRCVDDPPPNEGDRLDAALDGVDADELRAFLRDELVADANLRDRFLARVGEPTRQSVDELRTAIDRRFEETNPEYHVVF
EPIDFTQWFDLANEYREQGRDASAATVYRALVESLDDNMERVDGAYDHFSRAFSRAIDEYVDCVATAERDADAVTDAVAF
LEERATSGTPFLAEHFEKAAVELREKLGEQSCE

Sequences:

>Translated_273_residues
MEVTEDAVRDICTDAVFERGERYLADGCIHEIHRVDSTVIAVVSGSRQYDVRVDLATDGFTPWCDCPYDGPGACKHVVAV
LLRCVDDPPPNEGDRLDAALDGVDADELRAFLRDELVADANLRDRFLARVGEPTRQSVDELRTAIDRRFEETNPEYHVVF
EPIDFTQWFDLANEYREQGRDASAATVYRALVESLDDNMERVDGAYDHFSRAFSRAIDEYVDCVATAERDADAVTDAVAF
LEERATSGTPFLAEHFEKAAVELREKLGEQSCE
>Mature_273_residues
MEVTEDAVRDICTDAVFERGERYLADGCIHEIHRVDSTVIAVVSGSRQYDVRVDLATDGFTPWCDCPYDGPGACKHVVAV
LLRCVDDPPPNEGDRLDAALDGVDADELRAFLRDELVADANLRDRFLARVGEPTRQSVDELRTAIDRRFEETNPEYHVVF
EPIDFTQWFDLANEYREQGRDASAATVYRALVESLDDNMERVDGAYDHFSRAFSRAIDEYVDCVATAERDADAVTDAVAF
LEERATSGTPFLAEHFEKAAVELREKLGEQSCE

Specific function: Unknown

COG id: COG4715

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30668; Mature: 30668

Theoretical pI: Translated: 4.11; Mature: 4.11

Prosite motif: PS50966 ZF_SWIM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVTEDAVRDICTDAVFERGERYLADGCIHEIHRVDSTVIAVVSGSRQYDVRVDLATDGF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEEEEEECCCC
TPWCDCPYDGPGACKHVVAVLLRCVDDPPPNEGDRLDAALDGVDADELRAFLRDELVADA
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCC
NLRDRFLARVGEPTRQSVDELRTAIDRRFEETNPEYHVVFEPIDFTQWFDLANEYREQGR
CHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCC
DASAATVYRALVESLDDNMERVDGAYDHFSRAFSRAIDEYVDCVATAERDADAVTDAVAF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEERATSGTPFLAEHFEKAAVELREKLGEQSCE
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEVTEDAVRDICTDAVFERGERYLADGCIHEIHRVDSTVIAVVSGSRQYDVRVDLATDGF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEEEEEECCCC
TPWCDCPYDGPGACKHVVAVLLRCVDDPPPNEGDRLDAALDGVDADELRAFLRDELVADA
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCC
NLRDRFLARVGEPTRQSVDELRTAIDRRFEETNPEYHVVFEPIDFTQWFDLANEYREQGR
CHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCC
DASAATVYRALVESLDDNMERVDGAYDHFSRAFSRAIDEYVDCVATAERDADAVTDAVAF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEERATSGTPFLAEHFEKAAVELREKLGEQSCE
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA