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The map label for this gene is ycdH

Identifier: 16120187

GI number: 16120187

Start: 203903

End: 204952

Strand: Reverse

Name: ycdH

Synonym: VNG6265G

Alternate gene names: 16120187

Gene position: 204952-203903 (Counterclockwise)

Preceding gene: 16120188

Following gene: 16120186

Centisome position: 56.09

GC content: 63.43

Gene sequence:

>1050_bases
ATGGACGAGCAGACACACACGCACCTCTCACGCAGACGCACACTCACTGCCAGCGCCGGCGTTCTCAGCGCTGGCCTCGC
CGGTTGCATAACGAGCGGCGACACCGACGGAGACCCGGAATCGGGACCGACCGTCGCAGTCGCGTCGTTTTTCAGCTTCT
ATGACTTCGCGCGGAAGATCGTCGCCGACACGCCGATCACCGTCCGCAATCTCATTCCCACGGGGCTCCACGGCCACGGC
TGGGAGCCGAACGCAAGCATCACCAAGGAGATCCTCGACGCCGACGCGCTCATTCACGTCGGCCCGGATTTTCAACCCTG
GGTTGACCGCGCAATCGAATCACTGGACGACGACGACGCCGATACTCGCCGCATCAACGTTCGGGATGGCGTCGAACTCG
TTGACCTCGCTGCGAGCCTCGACCGCGACGAGGAGGGCATCGGCCAGAACCGCGGCAAAGACCCTCACTTCTGGCTCGAT
CCGAACCGAGCCAAGCAGTCCATCGACAACCTCACCGAGGGGTTCGTTCAGCTCGCACCCTCCCACGAAAACACACTCCG
AACGAACGCCGCCGCGTACAAATCCGGGGTCCTGGACGAGCTCGACGACGCATACGCCGCCATCTTCGACCGCGCCGACC
GTGACGTCGTTCAGTTGGCCGCGCACAACGCGTTCCAATACCTCGGGACGGCTTACGACATCGAAATGCGGCCGCTGGTG
GTGAACTTGGCCGCCAGCGGGACGGTCAAGGCATCCGACATCATGGACGCCAAGCAAACGATCGACGACAACGACATCAC
GTACATCGGTGCGGCCGTGTTCGAAACCCGCCGCCCCGCCGAACAGCTGCTCAGTGAAACCGACGTGGAAGCCTATTACC
CAGTCACGCCCTACGCGGGCGTTCGCGAGGACTGGGTCCAGCAGGGCTGGGGCTACGAGGAGATCGCGCGTAACATCAAC
ATGCCCACGTTCAAGCTCCTGCTCGGGAACGCGGCTCCGGACGACGTCGGGGGCGCCGAGTGGAACGCCACATGGAGGAA
CTTCGAATGA

Upstream 100 bases:

>100_bases
TGGTCTCTGGTGGGAACGCCCGTCCAAGGATTTGATACATCTAAATTTAGATTTAGATAGAAACTACTTTATAATTCTAT
CCGTCACGTTCCCAGTACCG

Downstream 100 bases:

>100_bases
CACCACACCACGACAACACTGCCGACACGCCCGCCATCGAGCTCGCCGATGTCGCGTTCGGGTACACAGCCACCCCGGTC
GTCGAAGACATCTCCCTTGC

Product: adhesion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MDEQTHTHLSRRRTLTASAGVLSAGLAGCITSGDTDGDPESGPTVAVASFFSFYDFARKIVADTPITVRNLIPTGLHGHG
WEPNASITKEILDADALIHVGPDFQPWVDRAIESLDDDDADTRRINVRDGVELVDLAASLDRDEEGIGQNRGKDPHFWLD
PNRAKQSIDNLTEGFVQLAPSHENTLRTNAAAYKSGVLDELDDAYAAIFDRADRDVVQLAAHNAFQYLGTAYDIEMRPLV
VNLAASGTVKASDIMDAKQTIDDNDITYIGAAVFETRRPAEQLLSETDVEAYYPVTPYAGVREDWVQQGWGYEEIARNIN
MPTFKLLLGNAAPDDVGGAEWNATWRNFE

Sequences:

>Translated_349_residues
MDEQTHTHLSRRRTLTASAGVLSAGLAGCITSGDTDGDPESGPTVAVASFFSFYDFARKIVADTPITVRNLIPTGLHGHG
WEPNASITKEILDADALIHVGPDFQPWVDRAIESLDDDDADTRRINVRDGVELVDLAASLDRDEEGIGQNRGKDPHFWLD
PNRAKQSIDNLTEGFVQLAPSHENTLRTNAAAYKSGVLDELDDAYAAIFDRADRDVVQLAAHNAFQYLGTAYDIEMRPLV
VNLAASGTVKASDIMDAKQTIDDNDITYIGAAVFETRRPAEQLLSETDVEAYYPVTPYAGVREDWVQQGWGYEEIARNIN
MPTFKLLLGNAAPDDVGGAEWNATWRNFE
>Mature_349_residues
MDEQTHTHLSRRRTLTASAGVLSAGLAGCITSGDTDGDPESGPTVAVASFFSFYDFARKIVADTPITVRNLIPTGLHGHG
WEPNASITKEILDADALIHVGPDFQPWVDRAIESLDDDDADTRRINVRDGVELVDLAASLDRDEEGIGQNRGKDPHFWLD
PNRAKQSIDNLTEGFVQLAPSHENTLRTNAAAYKSGVLDELDDAYAAIFDRADRDVVQLAAHNAFQYLGTAYDIEMRPLV
VNLAASGTVKASDIMDAKQTIDDNDITYIGAAVFETRRPAEQLLSETDVEAYYPVTPYAGVREDWVQQGWGYEEIARNIN
MPTFKLLLGNAAPDDVGGAEWNATWRNFE

Specific function: Part of the high-affinity ABC transporter complex AdcABC involved in zinc import (Probable) [H]

COG id: COG0803

COG function: function code P; ABC-type metal ion transport system, periplasmic component/surface adhesin

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 9 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006127
- InterPro:   IPR006129
- InterPro:   IPR006128 [H]

Pfam domain/function: PF01297 SBP_bac_9 [H]

EC number: NA

Molecular weight: Translated: 38341; Mature: 38341

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEQTHTHLSRRRTLTASAGVLSAGLAGCITSGDTDGDPESGPTVAVASFFSFYDFARKI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
VADTPITVRNLIPTGLHGHGWEPNASITKEILDADALIHVGPDFQPWVDRAIESLDDDDA
HHCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCC
DTRRINVRDGVELVDLAASLDRDEEGIGQNRGKDPHFWLDPNRAKQSIDNLTEGFVQLAP
CCEEEECCCCHHHHHHHHHCCCCHHCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCC
SHENTLRTNAAAYKSGVLDELDDAYAAIFDRADRDVVQLAAHNAFQYLGTAYDIEMRPLV
CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEECCEE
VNLAASGTVKASDIMDAKQTIDDNDITYIGAAVFETRRPAEQLLSETDVEAYYPVTPYAG
EEEECCCCCCHHHHHHHHHHCCCCCCEEEHHHHHHCCCHHHHHHHHCCCCEEECCCCCCC
VREDWVQQGWGYEEIARNINMPTFKLLLGNAAPDDVGGAEWNATWRNFE
CHHHHHHCCCCHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDEQTHTHLSRRRTLTASAGVLSAGLAGCITSGDTDGDPESGPTVAVASFFSFYDFARKI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
VADTPITVRNLIPTGLHGHGWEPNASITKEILDADALIHVGPDFQPWVDRAIESLDDDDA
HHCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCC
DTRRINVRDGVELVDLAASLDRDEEGIGQNRGKDPHFWLDPNRAKQSIDNLTEGFVQLAP
CCEEEECCCCHHHHHHHHHCCCCHHCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCC
SHENTLRTNAAAYKSGVLDELDDAYAAIFDRADRDVVQLAAHNAFQYLGTAYDIEMRPLV
CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEECCEE
VNLAASGTVKASDIMDAKQTIDDNDITYIGAAVFETRRPAEQLLSETDVEAYYPVTPYAG
EEEECCCCCCHHHHHHHHHHCCCCCCEEEHHHHHHCCCHHHHHHHHCCCCEEECCCCCCC
VREDWVQQGWGYEEIARNINMPTFKLLLGNAAPDDVGGAEWNATWRNFE
CHHHHHHCCCCHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9274031; 9384377; 9811636 [H]