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The map label for this gene is gvpC2

Identifier: 16120173

GI number: 16120173

Start: 192336

End: 193043

Strand: Direct

Name: gvpC2

Synonym: VNG6242G

Alternate gene names: 16120173

Gene position: 192336-193043 (Clockwise)

Preceding gene: 16120172

Following gene: 16120174

Centisome position: 52.63

GC content: 67.94

Gene sequence:

>708_bases
ATGCGGGCGGCCGTGGACGCGTACTGTGAGTCGTTCGCCACTGCTGTCAGCACTCACCACGACGAGACCGCCGCGCTCCG
GGCGGACCTCGAAGCCACGGCAGCGGCGTTCGACGCCTACACCACCGCGTTCGCTGCCGACGCCGCCGCTATGCACGACG
TTTCGGCGCTGCACCGCGACATCGAAGCGCTGCGCGAGGAGTTCCGTGCCGTCACGACCGACTTCGAGGACTACACCACC
GACGAGTTCGCCCCCGCCGTCGGGGCGTTGCACGCGGACGCCGCTGAGACGGCGGCGTCGTTCACCGCCAAACAGGAGGG
GTTCGAGGCGTACCGGCACGACGTGCACGAGAGTGCCGTCCCCGCGCTGACCGCTGACATCGCGGCAACGCGGGCTGACT
TCGACGACACTGCGGCGTCGTTTGCTGCGTACGCACGTGCGTTCTACGGACACACCGACGACGCCACTGCCCAGACGGAC
GCCGACGACACCACTGCCCAGACGGACGTGCTGTCGGGCCAGGCCACAGTCACCAGGGCACAGCCCGAAGAGGACGACAC
GCCCGAGGACATGGTGCAGTGTCGGGTGTGCGAGGAGTACTACCAGGCGATCACTGAGCCCCACCTCCAGACCCATGAGA
TGACCATCGACGGCTACCGCGACGAGTACGGCGAGGACGTTCCGCTCCGGCCGGATGATCACGCATGA

Upstream 100 bases:

>100_bases
CACCGACGTCCGCGAGGCGATGGACGCGTACGCCGAGGAGTTCGCCGCGGACGTCAACAGCATCCGTACGGACAGCCGGC
ACCGGGAGAACATCCGTGAC

Downstream 100 bases:

>100_bases
CCGACACCTCACGGAACCGCAAGGTCAGAGGGTCGAAAATCCGGTCCTCGCGCAGCGATAAGCGTCAGTCACGGGGCAGC
GAGGACAAGGAACTCAAGCG

Product: GvpC protein, cluster B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MRAAVDAYCESFATAVSTHHDETAALRADLEATAAAFDAYTTAFAADAAAMHDVSALHRDIEALREEFRAVTTDFEDYTT
DEFAPAVGALHADAAETAASFTAKQEGFEAYRHDVHESAVPALTADIAATRADFDDTAASFAAYARAFYGHTDDATAQTD
ADDTTAQTDVLSGQATVTRAQPEEDDTPEDMVQCRVCEEYYQAITEPHLQTHEMTIDGYRDEYGEDVPLRPDDHA

Sequences:

>Translated_235_residues
MRAAVDAYCESFATAVSTHHDETAALRADLEATAAAFDAYTTAFAADAAAMHDVSALHRDIEALREEFRAVTTDFEDYTT
DEFAPAVGALHADAAETAASFTAKQEGFEAYRHDVHESAVPALTADIAATRADFDDTAASFAAYARAFYGHTDDATAQTD
ADDTTAQTDVLSGQATVTRAQPEEDDTPEDMVQCRVCEEYYQAITEPHLQTHEMTIDGYRDEYGEDVPLRPDDHA
>Mature_235_residues
MRAAVDAYCESFATAVSTHHDETAALRADLEATAAAFDAYTTAFAADAAAMHDVSALHRDIEALREEFRAVTTDFEDYTT
DEFAPAVGALHADAAETAASFTAKQEGFEAYRHDVHESAVPALTADIAATRADFDDTAASFAAYARAFYGHTDDATAQTD
ADDTTAQTDVLSGQATVTRAQPEEDDTPEDMVQCRVCEEYYQAITEPHLQTHEMTIDGYRDEYGEDVPLRPDDHA

Specific function: May confer stability to the gas vesicle membranes. Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth

COG id: NA

COG function: NA

Gene ontology:

Cell location: Vacuole, gas vesicle membrane; Peripheral membrane protein; Cytoplasmic side. Note=Binds to the external surface of the gas vesicle membrane

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the halobacterial gas vesicle protein type C family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GVPC2_HALSA (Q9HHT0)

Other databases:

- EMBL:   X64730
- EMBL:   X94688
- EMBL:   AE004438
- RefSeq:   NP_395761.1
- GeneID:   1449144
- GenomeReviews:   AE004438_GR
- KEGG:   hal:VNG6242G
- NMPDR:   fig|64091.1.peg.2445
- HOGENOM:   HBG096369
- ProtClustDB:   CLSK539586
- BioCyc:   HSP64091:VNG6242G-MONOMER
- GO:   GO:0016020
- GO:   GO:0005773
- InterPro:   IPR008639

Pfam domain/function: PF05465 Halo_GVPC

EC number: NA

Molecular weight: Translated: 25521; Mature: 25521

Theoretical pI: Translated: 3.94; Mature: 3.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAAVDAYCESFATAVSTHHDETAALRADLEATAAAFDAYTTAFAADAAAMHDVSALHRD
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEALREEFRAVTTDFEDYTTDEFAPAVGALHADAAETAASFTAKQEGFEAYRHDVHESAV
HHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PALTADIAATRADFDDTAASFAAYARAFYGHTDDATAQTDADDTTAQTDVLSGQATVTRA
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEECC
QPEEDDTPEDMVQCRVCEEYYQAITEPHLQTHEMTIDGYRDEYGEDVPLRPDDHA
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHEEECCHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MRAAVDAYCESFATAVSTHHDETAALRADLEATAAAFDAYTTAFAADAAAMHDVSALHRD
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEALREEFRAVTTDFEDYTTDEFAPAVGALHADAAETAASFTAKQEGFEAYRHDVHESAV
HHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PALTADIAATRADFDDTAASFAAYARAFYGHTDDATAQTDADDTTAQTDVLSGQATVTRA
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEECC
QPEEDDTPEDMVQCRVCEEYYQAITEPHLQTHEMTIDGYRDEYGEDVPLRPDDHA
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHEEECCHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1404376; 8763925; 11016950