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The map label for this gene is gvpD2

Identifier: 16120171

GI number: 16120171

Start: 190115

End: 191593

Strand: Reverse

Name: gvpD2

Synonym: VNG6240G

Alternate gene names: 16120171

Gene position: 191593-190115 (Counterclockwise)

Preceding gene: 16120179

Following gene: 16120170

Centisome position: 52.43

GC content: 66.19

Gene sequence:

>1479_bases
ATGAGCGCACGCACGCCACTCCACGCACCCCCATCCCACGAGGGGATCGCACACTTCCCCCGCGAGATCCGGCGGTTTTT
CACCGGCGAGCCGGGCCAGACGCTGCTGGTCAACGGTGCCCCAGGCACGGGCAAAACGCTGTTCACGATCCGCGGCCTCG
ACGTGCTGAGCCGAGAGGGAGACGTGCTCTACGTGTCCACGCGCGTTGATCAGGAGACCGTCTACGAGATGTACGTCGAA
GGGCACGCCGCACTGGACAGAACAGCACTGCTCGACCTTTCACAGGACCCGTTCGGGTTGCCGATGGATGTCGACGTTCC
CTTCGAGACGCTGAACCTGGAGTCGTTGCTCTCGTGGGTCGACGCCATCAGCGCCCCGGCCACCAAGCTCACACTCGCCT
TCGACAGCTGGCGGCTGGTCTACGAGTATCTAGCCGCCCGCCACGACTCCCCACCCAGCATCGAAACCGTCACCAACCAA
CTCGTGGCGCTCGCCCGCGACGCCGGCGTGCGCCTCGTGTTGGTGTCCGAGACGGCCACCCAGTCGCCACTGGAGTACAT
CGTCGACGGCGTCGTGACACTCCACGTGACGGACAACGAGCGCGGCCGCACCAGACGCCAGCTGCGGTTAGAGAAGCTCC
GTGGCGTCCGCATCGAGAACCGCCTACAGCCGTTCACGCTGGCCGACGGACAGTTCAAAGCCATCACACCGGTCGAGCTG
TCGACCACGCAGTCGGTCCCCGACGAGGCGACCTGGGAGCCGTTGGCGAACCCGACGGCGCGATTCTCCACGGGGATCCG
AGACCTCGATACCATCCTCTCGGGGGGGTTCAATCGCGGCGGGGTCGTCCACCTCGATCTGGGGGCCGACCTGTCCCGCG
ATGCCTGGAGCGTGCTGGTGTTGCCGGCGATCCGGAACTTCCTCGCAAACGAGATGGGGGTCGCCGTCGTCCCCCCCAAG
GAGGGCAGCCCGGGGTTGCTGCACAACGACCTCAGCGCGGTCCTCTCCAAGGCGGTGTTCGACACGCACTGCCACGTCTT
CGAGACGTACGCCGGCCCCACGCGAGACCACGACGACGCAGTGGATCCCGACCGACTGCCCGGCCACGACACCACGCCGA
CCGAACACGGGACGCTGTCCTACGACCCGTATATCGCCCGCGCCGAACGGATCCGAGAGCACAGTGACGGGCCGCTGCTA
CACGTCATTAGCATGGATACAGCCTACCACGCCTTCGAAACCCGCCTGGGCGACTTCGCGAACTACGTCGCCCTGCACAA
CGACGCAAGCGTTCTCATCACCAAGCCAGGGACCGCCCTCCGCACGCGAGCAGACCGCGTCGCGGACATGCACTTCCGAC
TGGAGTGTGCCGGCGACGCCATCGTGCTGTACGGCGAAACCCCGCTCACGCCGCTGCTCGGAATCGGCGTCGACCAGTCC
GGCACGATCCCGGAAATCACGCTCACGGAGATGGTGTGA

Upstream 100 bases:

>100_bases
GAATATTACGGGTCGAAACTCCAGGTAACAGAGCGTTGAGACAGTCACGCCGCGAGGTGACCACCGGCACCACACGACCG
ACGACCACACAGACCGACCA

Downstream 100 bases:

>100_bases
CCGCATGGACGACCTCTTAGCGGAGCTCAAATCCGAGATGGATGCGGCCGGCGTCGACGCCGACGTGGAGTTCTCGCTGC
CGACCCTGGAGCTCACGGCG

Product: GvpD protein, cluster B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 492; Mature: 491

Protein sequence:

>492_residues
MSARTPLHAPPSHEGIAHFPREIRRFFTGEPGQTLLVNGAPGTGKTLFTIRGLDVLSREGDVLYVSTRVDQETVYEMYVE
GHAALDRTALLDLSQDPFGLPMDVDVPFETLNLESLLSWVDAISAPATKLTLAFDSWRLVYEYLAARHDSPPSIETVTNQ
LVALARDAGVRLVLVSETATQSPLEYIVDGVVTLHVTDNERGRTRRQLRLEKLRGVRIENRLQPFTLADGQFKAITPVEL
STTQSVPDEATWEPLANPTARFSTGIRDLDTILSGGFNRGGVVHLDLGADLSRDAWSVLVLPAIRNFLANEMGVAVVPPK
EGSPGLLHNDLSAVLSKAVFDTHCHVFETYAGPTRDHDDAVDPDRLPGHDTTPTEHGTLSYDPYIARAERIREHSDGPLL
HVISMDTAYHAFETRLGDFANYVALHNDASVLITKPGTALRTRADRVADMHFRLECAGDAIVLYGETPLTPLLGIGVDQS
GTIPEITLTEMV

Sequences:

>Translated_492_residues
MSARTPLHAPPSHEGIAHFPREIRRFFTGEPGQTLLVNGAPGTGKTLFTIRGLDVLSREGDVLYVSTRVDQETVYEMYVE
GHAALDRTALLDLSQDPFGLPMDVDVPFETLNLESLLSWVDAISAPATKLTLAFDSWRLVYEYLAARHDSPPSIETVTNQ
LVALARDAGVRLVLVSETATQSPLEYIVDGVVTLHVTDNERGRTRRQLRLEKLRGVRIENRLQPFTLADGQFKAITPVEL
STTQSVPDEATWEPLANPTARFSTGIRDLDTILSGGFNRGGVVHLDLGADLSRDAWSVLVLPAIRNFLANEMGVAVVPPK
EGSPGLLHNDLSAVLSKAVFDTHCHVFETYAGPTRDHDDAVDPDRLPGHDTTPTEHGTLSYDPYIARAERIREHSDGPLL
HVISMDTAYHAFETRLGDFANYVALHNDASVLITKPGTALRTRADRVADMHFRLECAGDAIVLYGETPLTPLLGIGVDQS
GTIPEITLTEMV
>Mature_491_residues
SARTPLHAPPSHEGIAHFPREIRRFFTGEPGQTLLVNGAPGTGKTLFTIRGLDVLSREGDVLYVSTRVDQETVYEMYVEG
HAALDRTALLDLSQDPFGLPMDVDVPFETLNLESLLSWVDAISAPATKLTLAFDSWRLVYEYLAARHDSPPSIETVTNQL
VALARDAGVRLVLVSETATQSPLEYIVDGVVTLHVTDNERGRTRRQLRLEKLRGVRIENRLQPFTLADGQFKAITPVELS
TTQSVPDEATWEPLANPTARFSTGIRDLDTILSGGFNRGGVVHLDLGADLSRDAWSVLVLPAIRNFLANEMGVAVVPPKE
GSPGLLHNDLSAVLSKAVFDTHCHVFETYAGPTRDHDDAVDPDRLPGHDTTPTEHGTLSYDPYIARAERIREHSDGPLLH
VISMDTAYHAFETRLGDFANYVALHNDASVLITKPGTALRTRADRVADMHFRLECAGDAIVLYGETPLTPLLGIGVDQSG
TIPEITLTEMV

Specific function: May play a role in an energy requiring process such as assembly of gas vesicles in addition to a possible structural or regulatory function

COG id: COG0467

COG function: function code T; RecA-superfamily ATPases implicated in signal transduction

Gene ontology:

Cell location: Vacuole, gas vesicle (Probable)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GVPD2_HALSA (Q9HHT2)

Other databases:

- EMBL:   X64730
- EMBL:   X94688
- EMBL:   AE004438
- RefSeq:   NP_395759.1
- ProteinModelPortal:   Q9HHT2
- SMR:   Q9HHT2
- GeneID:   1449142
- GenomeReviews:   AE004438_GR
- KEGG:   hal:VNG6240G
- NMPDR:   fig|64091.1.peg.2443
- HOGENOM:   HBG096384
- OMA:   NICEFAR
- ProtClustDB:   CLSK539585
- BioCyc:   HSP64091:VNG6240G-MONOMER
- GO:   GO:0005773
- InterPro:   IPR009788

Pfam domain/function: PF07088 GvpD

EC number: NA

Molecular weight: Translated: 53929; Mature: 53798

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSARTPLHAPPSHEGIAHFPREIRRFFTGEPGQTLLVNGAPGTGKTLFTIRGLDVLSREG
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCHHHCCCC
DVLYVSTRVDQETVYEMYVEGHAALDRTALLDLSQDPFGLPMDVDVPFETLNLESLLSWV
CEEEEEECCCHHHHHHHHHCCCHHCCCEEEEECCCCCCCCCEECCCCHHHCCHHHHHHHH
DAISAPATKLTLAFDSWRLVYEYLAARHDSPPSIETVTNQLVALARDAGVRLVLVSETAT
HHHCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCC
QSPLEYIVDGVVTLHVTDNERGRTRRQLRLEKLRGVRIENRLQPFTLADGQFKAITPVEL
CCHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHCCCCHHCCCCCEEECCCCEEEECCEEE
STTQSVPDEATWEPLANPTARFSTGIRDLDTILSGGFNRGGVVHLDLGADLSRDAWSVLV
CCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHEEE
LPAIRNFLANEMGVAVVPPKEGSPGLLHNDLSAVLSKAVFDTHCHVFETYAGPTRDHDDA
HHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCC
VDPDRLPGHDTTPTEHGTLSYDPYIARAERIREHSDGPLLHVISMDTAYHAFETRLGDFA
CCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHH
NYVALHNDASVLITKPGTALRTRADRVADMHFRLECAGDAIVLYGETPLTPLLGIGVDQS
HEEEEECCCEEEEECCCCHHHHHHHHHHEEEEEEEECCCEEEEECCCCCCHHEECCCCCC
GTIPEITLTEMV
CCCCCEEHHCCC
>Mature Secondary Structure 
SARTPLHAPPSHEGIAHFPREIRRFFTGEPGQTLLVNGAPGTGKTLFTIRGLDVLSREG
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCHHHCCCC
DVLYVSTRVDQETVYEMYVEGHAALDRTALLDLSQDPFGLPMDVDVPFETLNLESLLSWV
CEEEEEECCCHHHHHHHHHCCCHHCCCEEEEECCCCCCCCCEECCCCHHHCCHHHHHHHH
DAISAPATKLTLAFDSWRLVYEYLAARHDSPPSIETVTNQLVALARDAGVRLVLVSETAT
HHHCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCC
QSPLEYIVDGVVTLHVTDNERGRTRRQLRLEKLRGVRIENRLQPFTLADGQFKAITPVEL
CCHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHCCCCHHCCCCCEEECCCCEEEECCEEE
STTQSVPDEATWEPLANPTARFSTGIRDLDTILSGGFNRGGVVHLDLGADLSRDAWSVLV
CCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHEEE
LPAIRNFLANEMGVAVVPPKEGSPGLLHNDLSAVLSKAVFDTHCHVFETYAGPTRDHDDA
HHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCC
VDPDRLPGHDTTPTEHGTLSYDPYIARAERIREHSDGPLLHVISMDTAYHAFETRLGDFA
CCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHH
NYVALHNDASVLITKPGTALRTRADRVADMHFRLECAGDAIVLYGETPLTPLLGIGVDQS
HEEEEECCCEEEEECCCCHHHHHHHHHHEEEEEEEECCCEEEEECCCCCCHHEECCCCCC
GTIPEITLTEMV
CCCCCEEHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1404376; 8763925; 11016950