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The map label for this gene is gvpE2

Identifier: 16120170

GI number: 16120170

Start: 189529

End: 190110

Strand: Reverse

Name: gvpE2

Synonym: VNG6239G

Alternate gene names: 16120170

Gene position: 190110-189529 (Counterclockwise)

Preceding gene: 16120171

Following gene: 16120169

Centisome position: 52.02

GC content: 63.92

Gene sequence:

>582_bases
ATGGACGACCTCTTAGCGGAGCTCAAATCCGAGATGGATGCGGCCGGCGTCGACGCCGACGTGGAGTTCTCGCTGCCGAC
CCTGGAGCTCACGGCGGCGCTCGACGCCACCATCGACGACACGTCCCAGCTCTACACCGATGATCCGCCACACCATTACA
CGGACACGCCGCTGACCGGCGACGACCTCCCGCTGCTCGAGGCCTGGCTGGACGACGCCCAGCTCCACGGCGTCGGCGAC
GACATCATCGCCGAATACATCGACGAAGTGTTGCTGGTGTTGATCACCGTGCGTGGCGGTGCCTGTGGCAAGGAGTTGCT
ACAGGACGTGCGGCGGTTGTTCGGCGCGGATGTCAGCCCGGGCACGATGTACCCACACCTCAAGCAGCTCGCCGATGCCG
GCCTCCTCGAAATGAGCGAACTCACCAAGCGGAAGGTGTACCGCGTCGCGGACGCCCAAGCCGCCATCGAGCACGTCGAC
AGCGTCGTCCTGCAGTTGCTCACGTTCGCTGTCGGATTACAGACCATCATGGCAGACTGCATCGTGAACCAATCAGCGGA
CCCACAGCCCCAGGATGAGTGA

Upstream 100 bases:

>100_bases
GTGCTGTACGGCGAAACCCCGCTCACGCCGCTGCTCGGAATCGGCGTCGACCAGTCCGGCACGATCCCGGAAATCACGCT
CACGGAGATGGTGTGACCGC

Downstream 100 bases:

>100_bases
GTCACACCTCTACACGTACGGCATCATCGACGACAACGAATCGCTCGCCCTGAACGTCGACGGCGTCGCCGGCGCGACCC
GCGCGTACACCGTCTCGTAC

Product: GvpE protein, cluster B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MDDLLAELKSEMDAAGVDADVEFSLPTLELTAALDATIDDTSQLYTDDPPHHYTDTPLTGDDLPLLEAWLDDAQLHGVGD
DIIAEYIDEVLLVLITVRGGACGKELLQDVRRLFGADVSPGTMYPHLKQLADAGLLEMSELTKRKVYRVADAQAAIEHVD
SVVLQLLTFAVGLQTIMADCIVNQSADPQPQDE

Sequences:

>Translated_193_residues
MDDLLAELKSEMDAAGVDADVEFSLPTLELTAALDATIDDTSQLYTDDPPHHYTDTPLTGDDLPLLEAWLDDAQLHGVGD
DIIAEYIDEVLLVLITVRGGACGKELLQDVRRLFGADVSPGTMYPHLKQLADAGLLEMSELTKRKVYRVADAQAAIEHVD
SVVLQLLTFAVGLQTIMADCIVNQSADPQPQDE
>Mature_193_residues
MDDLLAELKSEMDAAGVDADVEFSLPTLELTAALDATIDDTSQLYTDDPPHHYTDTPLTGDDLPLLEAWLDDAQLHGVGD
DIIAEYIDEVLLVLITVRGGACGKELLQDVRRLFGADVSPGTMYPHLKQLADAGLLEMSELTKRKVYRVADAQAAIEHVD
SVVLQLLTFAVGLQTIMADCIVNQSADPQPQDE

Specific function: May play a structural or regulatory role in gas vesicle synthesis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Vacuole, gas vesicle (Probable)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GVPE2_HALSA (Q48311)

Other databases:

- EMBL:   X94688
- EMBL:   AE004438
- RefSeq:   NP_395758.1
- ProteinModelPortal:   Q48311
- SMR:   Q48311
- GeneID:   1449141
- GenomeReviews:   AE004438_GR
- KEGG:   hal:VNG6239G
- NMPDR:   fig|64091.1.peg.2442
- HOGENOM:   HBG096378
- ProtClustDB:   CLSK539584
- BioCyc:   HSP64091:VNG6239G-MONOMER
- GO:   GO:0005773
- InterPro:   IPR005149
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10

Pfam domain/function: PF03551 PadR

EC number: NA

Molecular weight: Translated: 20961; Mature: 20961

Theoretical pI: Translated: 3.79; Mature: 3.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDLLAELKSEMDAAGVDADVEFSLPTLELTAALDATIDDTSQLYTDDPPHHYTDTPLTG
CHHHHHHHHHHHHHCCCCCCCEECCCHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCC
DDLPLLEAWLDDAQLHGVGDDIIAEYIDEVLLVLITVRGGACGKELLQDVRRLFGADVSP
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
GTMYPHLKQLADAGLLEMSELTKRKVYRVADAQAAIEHVDSVVLQLLTFAVGLQTIMADC
CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVNQSADPQPQDE
HHCCCCCCCCCCC
>Mature Secondary Structure
MDDLLAELKSEMDAAGVDADVEFSLPTLELTAALDATIDDTSQLYTDDPPHHYTDTPLTG
CHHHHHHHHHHHHHCCCCCCCEECCCHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCC
DDLPLLEAWLDDAQLHGVGDDIIAEYIDEVLLVLITVRGGACGKELLQDVRRLFGADVSP
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
GTMYPHLKQLADAGLLEMSELTKRKVYRVADAQAAIEHVDSVVLQLLTFAVGLQTIMADC
CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVNQSADPQPQDE
HHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8763925; 11016950