| Definition | Ureaplasma parvum serovar 3 str. ATCC 700970, complete genome. |
|---|---|
| Accession | NC_002162 |
| Length | 751,719 |
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Identifier: 13357724
GI number: 13357724
Start: 202550
End: 205384
Strand: Reverse
Name: Not Available
Synonym: UU166
Alternate gene names: NA
Gene position: 205384-202550 (Counterclockwise)
Preceding gene: 13357725
Following gene: 13357723
Centisome position: 27.32
GC content: 28.57
Gene sequence:
>2835_bases ATGGAGAGTTTGAAAATGAGTAATATTTATTTAGATGAACTTGAAGGTTATAGTCAAAAAAATATTGAAGACAGCATTGA TAGTTTAATTGAACCAAACCAAAAACCAATTCATTTATGTCCATTTAGAATACTAAAAGGTTTTATTAAAATTACAAACA CCGGTGAACAATCATTATTAGTAAATGACAAAGATTTTAGCACTGTTTGAAATATTAAAGCAAGTAATGAGCCAATCATT GCGTATTGAGATAAATCATTTACGTATAACTTTAAAGGTAGTTTAAATTACATTAGTAAAGATTACGCACGTATTGATCC AAGTAATACAACGCTAAAAAACAACTTTAAACCTTATTATTTTCAAGCATGAGTACAAAATTATTCCCAAGCAAATAATG TATCTACAATTGTTTTTAATGATAAAGAACATACAGTTATTAAAACAATTACAACAGTTACTTTAATTGTTAAATATCCA AGTGTTTATGAAGATGAAATATACCAAAATGAACAAGGTAATTTAGTTAGTCATAAAGCAAAGTTTAAACAATGAACTAC AGATATGTTAAAAGAATATTTATTCATTATTCCAGATGAACACGCACAAGCTAATCAATGATTAATGGTTAATGAAGTCA TTCCTTTTTATTCAACAACATCAAAACGTTATGAAGGAGCACAAATTACACTAACAAACGTTAACGATTTACTAACATCA TCTGGTAATGATATATTAGCAACAATTCAACCATGTCAACCTGGAGATGGTTATTTATGACCAGTAATTCAAAATGGTAA ATTAACATATGATGAACGTAAAGAAAAACCGTTAGGAGTTAAAAGTATTCAATTATTAACTAATGGACCATATGCATTAA ATAGTATGTTAATAACAGGACGAACTTATAATAATGACACACGAGAGTTAAGTGCTAATAAGCGATTATTACTATATAAA GCTAAAATACCAGTCGCATCTAAATTCTTTAATGTATCAGCACCAACAAGTAATTATGTATATTTATACAATGCGTTTTT TGAAATTGAAAAGATTTATAAAGACCAGTATGAAAAACAAAAAGATTTTACATTTGACCATAACGCTAATATTAAATTAA ATGGTGGATTATTATTAAATCATAAATGAGACGCAAGCAATAACGCACTAAGTTATGAAGACAATCGTTATCCATTTAAA TTATGAGATGAAGGTTTTAAAATACATGCGAGCTTTTTTAACTTTAAATTAGGTGGAACAGGAGCACAAAAGGGCGGATC ATTAACTGAAAATGCAGAACAAAAAAAGCCGTTAGCTGATGCTGTTGTAACTGGTCAAGTTGCTGGTGAAGTTGTGAGTA CAGTGTTTGAAAGTATTGGACGTAATGTTTCACAAGGATTTAATTTAAATAATTTAGGTTTATGGTCTTTTAATATGGGA TTTGCTAAAACCAAAGCTGAACAAATAAAAGAAGCAACTAAAATTGGATTAAACAACATTACAATGCCACCTGGTACTAA TTTGCATACGTTTTTAAATCACAATGCATTTATGTATGATTTGATTAAGTATTTACCATATTCATACAAGGAAACAATCC GTCAAAATCTTGGTGAATTAATAGATAATACACCACTTAGTTTAGGTAAAGTTAGACGTGGTATTGTAGATATTTTATAT CCTGGTTGAACCAAAGTTGAAGACGCAACAGGTTATAACATGTCAAACATTTGATTAAATACACGTGGTTTTAATTTTAT TGCACCATGTTTACCGCTTGAATTAGAAGTATCAAATAAACTAAAAGCGGATTTAATTAATTTAGATATTTTCACTAACA AACCAGCTAAAACATTTAGTCCACTTGGCATACCAGCCATTGCTTGTTGTTATCATTTTGATATAACTGATAGATTTGCT AAATTTGTAGATGATGAGCTAAAAGTATTTGATACTGAACTAATTGGACAAACAACATATCGTGATGGTACGTATATAAG AAAAGATAAAAAACCTTTATATTGAGATAGTTTCTGTGAAGCATTACCACCAAACACACCGCTTAGTTATGAACCAGCTG TTATTAATATAGCGTCTGGTAAACGTGAAGATGTTAATCGTGTTAAATATCCTTATGTAATTGATACGATTGATATTAAA GGCTTGGGTAAGTGTGATATTAAACTAACAGCTTTTAGTGGCTTTTATTCACCAGATGCACGATTAAAAGACGAATTTAA AAACGTGTACGAAGCGATTTTTGAAAGCAATGGAAAATATACTGATGATATGAGTCAATGAAGCAACTATATTAATTTTT CAACGCTTGATGAGATTAATTCAGTTGGAACTAAACTAAGTTATCCAAAGCCACCAGTTGAAACTGATTTTTTAAAAAAT ACTAAAACAAATAGTGATGATGGAGTTAATGCAAGTTTACAAACAATTAATGAAACATTATATAAAGTGGGCGATAATTC ATTATTAAGTGCTACGCAATATAGAAAACCACGCTTTTATTTTTATGAACCAGACAGTTCTAAATTAGCAAATCTATTTG GTTATGGTTCATATACTAATAAACTAAATTATTTATTTGGTGGAAGTAATTTAAGTGATGTAATTGTTGCTAATAAAGTT ATTGCTTATAGTTTTGTGTTTAAATGAGATTTTAATTATCGTGAATGGTTAAATTTAGGTTCAGTTAATAAAACAAAACG TAATTTAAAACTAACATTTGAGATTGAAAGTAATTGGATACAGAAAGGATGAACAAATCAGTTTAACGTTGATAATAGTT TCAATCAGCTAATAACTTTGTTGGTTTTGAACTAA
Upstream 100 bases:
>100_bases ATGCCACTTAATTTAGCTGTACAAAAATTATATCCAGAACTTACACCTACCGAACAAGATGAACTAGTAAAAGAATTAGA ACATAAACAAAAACTAGAAA
Downstream 100 bases:
>100_bases CAAAAGATAATAAATTAAAATATGGTGGTAATTATGCAGTAGATTTAAACACACCAAATAAAAAATCAACAATTAGTACA TTTAGTATTAAAGCTGATGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 944; Mature: 944
Protein sequence:
>944_residues MESLKMSNIYLDELEGYSQKNIEDSIDSLIEPNQKPIHLCPFRILKGFIKITNTGEQSLLVNDKDFSTVWNIKASNEPII AYWDKSFTYNFKGSLNYISKDYARIDPSNTTLKNNFKPYYFQAWVQNYSQANNVSTIVFNDKEHTVIKTITTVTLIVKYP SVYEDEIYQNEQGNLVSHKAKFKQWTTDMLKEYLFIIPDEHAQANQWLMVNEVIPFYSTTSKRYEGAQITLTNVNDLLTS SGNDILATIQPCQPGDGYLWPVIQNGKLTYDERKEKPLGVKSIQLLTNGPYALNSMLITGRTYNNDTRELSANKRLLLYK AKIPVASKFFNVSAPTSNYVYLYNAFFEIEKIYKDQYEKQKDFTFDHNANIKLNGGLLLNHKWDASNNALSYEDNRYPFK LWDEGFKIHASFFNFKLGGTGAQKGGSLTENAEQKKPLADAVVTGQVAGEVVSTVFESIGRNVSQGFNLNNLGLWSFNMG FAKTKAEQIKEATKIGLNNITMPPGTNLHTFLNHNAFMYDLIKYLPYSYKETIRQNLGELIDNTPLSLGKVRRGIVDILY PGWTKVEDATGYNMSNIWLNTRGFNFIAPCLPLELEVSNKLKADLINLDIFTNKPAKTFSPLGIPAIACCYHFDITDRFA KFVDDELKVFDTELIGQTTYRDGTYIRKDKKPLYWDSFCEALPPNTPLSYEPAVINIASGKREDVNRVKYPYVIDTIDIK GLGKCDIKLTAFSGFYSPDARLKDEFKNVYEAIFESNGKYTDDMSQWSNYINFSTLDEINSVGTKLSYPKPPVETDFLKN TKTNSDDGVNASLQTINETLYKVGDNSLLSATQYRKPRFYFYEPDSSKLANLFGYGSYTNKLNYLFGGSNLSDVIVANKV IAYSFVFKWDFNYREWLNLGSVNKTKRNLKLTFEIESNWIQKGWTNQFNVDNSFNQLITLLVLN
Sequences:
>Translated_944_residues MESLKMSNIYLDELEGYSQKNIEDSIDSLIEPNQKPIHLCPFRILKGFIKITNTGEQSLLVNDKDFSTV*NIKASNEPII AY*DKSFTYNFKGSLNYISKDYARIDPSNTTLKNNFKPYYFQA*VQNYSQANNVSTIVFNDKEHTVIKTITTVTLIVKYP SVYEDEIYQNEQGNLVSHKAKFKQ*TTDMLKEYLFIIPDEHAQANQ*LMVNEVIPFYSTTSKRYEGAQITLTNVNDLLTS SGNDILATIQPCQPGDGYL*PVIQNGKLTYDERKEKPLGVKSIQLLTNGPYALNSMLITGRTYNNDTRELSANKRLLLYK AKIPVASKFFNVSAPTSNYVYLYNAFFEIEKIYKDQYEKQKDFTFDHNANIKLNGGLLLNHK*DASNNALSYEDNRYPFK L*DEGFKIHASFFNFKLGGTGAQKGGSLTENAEQKKPLADAVVTGQVAGEVVSTVFESIGRNVSQGFNLNNLGLWSFNMG FAKTKAEQIKEATKIGLNNITMPPGTNLHTFLNHNAFMYDLIKYLPYSYKETIRQNLGELIDNTPLSLGKVRRGIVDILY PG*TKVEDATGYNMSNI*LNTRGFNFIAPCLPLELEVSNKLKADLINLDIFTNKPAKTFSPLGIPAIACCYHFDITDRFA KFVDDELKVFDTELIGQTTYRDGTYIRKDKKPLY*DSFCEALPPNTPLSYEPAVINIASGKREDVNRVKYPYVIDTIDIK GLGKCDIKLTAFSGFYSPDARLKDEFKNVYEAIFESNGKYTDDMSQ*SNYINFSTLDEINSVGTKLSYPKPPVETDFLKN TKTNSDDGVNASLQTINETLYKVGDNSLLSATQYRKPRFYFYEPDSSKLANLFGYGSYTNKLNYLFGGSNLSDVIVANKV IAYSFVFK*DFNYREWLNLGSVNKTKRNLKLTFEIESNWIQKG*TNQFNVDNSFNQLITLLVLN >Mature_944_residues MESLKMSNIYLDELEGYSQKNIEDSIDSLIEPNQKPIHLCPFRILKGFIKITNTGEQSLLVNDKDFSTV*NIKASNEPII AY*DKSFTYNFKGSLNYISKDYARIDPSNTTLKNNFKPYYFQA*VQNYSQANNVSTIVFNDKEHTVIKTITTVTLIVKYP SVYEDEIYQNEQGNLVSHKAKFKQ*TTDMLKEYLFIIPDEHAQANQ*LMVNEVIPFYSTTSKRYEGAQITLTNVNDLLTS SGNDILATIQPCQPGDGYL*PVIQNGKLTYDERKEKPLGVKSIQLLTNGPYALNSMLITGRTYNNDTRELSANKRLLLYK AKIPVASKFFNVSAPTSNYVYLYNAFFEIEKIYKDQYEKQKDFTFDHNANIKLNGGLLLNHK*DASNNALSYEDNRYPFK L*DEGFKIHASFFNFKLGGTGAQKGGSLTENAEQKKPLADAVVTGQVAGEVVSTVFESIGRNVSQGFNLNNLGLWSFNMG FAKTKAEQIKEATKIGLNNITMPPGTNLHTFLNHNAFMYDLIKYLPYSYKETIRQNLGELIDNTPLSLGKVRRGIVDILY PG*TKVEDATGYNMSNI*LNTRGFNFIAPCLPLELEVSNKLKADLINLDIFTNKPAKTFSPLGIPAIACCYHFDITDRFA KFVDDELKVFDTELIGQTTYRDGTYIRKDKKPLY*DSFCEALPPNTPLSYEPAVINIASGKREDVNRVKYPYVIDTIDIK GLGKCDIKLTAFSGFYSPDARLKDEFKNVYEAIFESNGKYTDDMSQ*SNYINFSTLDEINSVGTKLSYPKPPVETDFLKN TKTNSDDGVNASLQTINETLYKVGDNSLLSATQYRKPRFYFYEPDSSKLANLFGYGSYTNKLNYLFGGSNLSDVIVANKV IAYSFVFK*DFNYREWLNLGSVNKTKRNLKLTFEIESNWIQKG*TNQFNVDNSFNQLITLLVLN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 105066; Mature: 105066
Theoretical pI: Translated: 7.04; Mature: 7.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MESLKMSNIYLDELEGYSQKNIEDSIDSLIEPNQKPIHLCPFRILKGFIKITNTGEQSLL CCCCCCCCEEHHHHCCCCCCCHHHHHHHHHCCCCCCEEECHHHHHHHHEEEECCCCCEEE VNDKDFSTVNIKASNEPIIAYDKSFTYNFKGSLNYISKDYARIDPSNTTLKNNFKPYYFQ EECCCCEEEEEEECCCCEEEECCCEEEEECCCCCHHHCHHHEECCCCCEECCCCCHHHHH AVQNYSQANNVSTIVFNDKEHTVIKTITTVTLIVKYPSVYEDEIYQNEQGNLVSHKAKFK HHHHHHHCCCEEEEEECCCCCEEEEHEEEEEEEEECCCCHHHHHHCCCCCCEEHHHHHHH QTTDMLKEYLFIIPDEHAQANQLMVNEVIPFYSTTSKRYEGAQITLTNVNDLLTSSGNDI HHHHHHHHHEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHHHHCCCCCE LATIQPCQPGDGYLPVIQNGKLTYDERKEKPLGVKSIQLLTNGPYALNSMLITGRTYNND EEEEECCCCCCCEEEEEECCEECCHHCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCC TRELSANKRLLLYKAKIPVASKFFNVSAPTSNYVYLYNAFFEIEKIYKDQYEKQKDFTFD HHHHCCCCEEEEEEECCCCHHHEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCC HNANIKLNGGLLLNHKDASNNALSYEDNRYPFKLDEGFKIHASFFNFKLGGTGAQKGGSL CCCCEEECCCEEEECCCCCCCCCCCCCCCCCEEECCCCEEEEEEEEEEECCCCCCCCCCC TENAEQKKPLADAVVTGQVAGEVVSTVFESIGRNVSQGFNLNNLGLWSFNMGFAKTKAEQ CCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCEEEEEECCCHHHHHHHH IKEATKIGLNNITMPPGTNLHTFLNHNAFMYDLIKYLPYSYKETIRQNLGELIDNTPLSL HHHHHHCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCH GKVRRGIVDILYPGTKVEDATGYNMSNILNTRGFNFIAPCLPLELEVSNKLKADLINLDI HHHHHHHEEEECCCCCCCCCCCCCHHHHHHCCCCCEECCCCCEEEECCCCCEEEEEEEEE FTNKPAKTFSPLGIPAIACCYHFDITDRFAKFVDDELKVFDTELIGQTTYRDGTYIRKDK EECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCEEECCC KPLYDSFCEALPPNTPLSYEPAVINIASGKREDVNRVKYPYVIDTIDIKGLGKCDIKLTA CCHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHCCCCEEEEEEEECCCCCEEEEEEE FSGFYSPDARLKDEFKNVYEAIFESNGKYTDDMSQSNYINFSTLDEINSVGTKLSYPKPP ECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCC VETDFLKNTKTNSDDGVNASLQTINETLYKVGDNSLLSATQYRKPRFYFYEPDSSKLANL CCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCCEEEEECCCCHHHHHH FGYGSYTNKLNYLFGGSNLSDVIVANKVIAYSFVFKDFNYREWLNLGSVNKTKRNLKLTF HCCCCCCCCEEEEECCCCCCHHHHHHHHHEEEEECCCCCHHHHHCCCCCCCCCCCEEEEE EIESNWIQKGTNQFNVDNSFNQLITLLVLN EECCCHHHCCCCEECCCCCHHHEEEEEEEC >Mature Secondary Structure MESLKMSNIYLDELEGYSQKNIEDSIDSLIEPNQKPIHLCPFRILKGFIKITNTGEQSLL CCCCCCCCEEHHHHCCCCCCCHHHHHHHHHCCCCCCEEECHHHHHHHHEEEECCCCCEEE VNDKDFSTVNIKASNEPIIAYDKSFTYNFKGSLNYISKDYARIDPSNTTLKNNFKPYYFQ EECCCCEEEEEEECCCCEEEECCCEEEEECCCCCHHHCHHHEECCCCCEECCCCCHHHHH AVQNYSQANNVSTIVFNDKEHTVIKTITTVTLIVKYPSVYEDEIYQNEQGNLVSHKAKFK HHHHHHHCCCEEEEEECCCCCEEEEHEEEEEEEEECCCCHHHHHHCCCCCCEEHHHHHHH QTTDMLKEYLFIIPDEHAQANQLMVNEVIPFYSTTSKRYEGAQITLTNVNDLLTSSGNDI HHHHHHHHHEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHHHHCCCCCE LATIQPCQPGDGYLPVIQNGKLTYDERKEKPLGVKSIQLLTNGPYALNSMLITGRTYNND EEEEECCCCCCCEEEEEECCEECCHHCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCC TRELSANKRLLLYKAKIPVASKFFNVSAPTSNYVYLYNAFFEIEKIYKDQYEKQKDFTFD HHHHCCCCEEEEEEECCCCHHHEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCC HNANIKLNGGLLLNHKDASNNALSYEDNRYPFKLDEGFKIHASFFNFKLGGTGAQKGGSL CCCCEEECCCEEEECCCCCCCCCCCCCCCCCEEECCCCEEEEEEEEEEECCCCCCCCCCC TENAEQKKPLADAVVTGQVAGEVVSTVFESIGRNVSQGFNLNNLGLWSFNMGFAKTKAEQ CCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCEEEEEECCCHHHHHHHH IKEATKIGLNNITMPPGTNLHTFLNHNAFMYDLIKYLPYSYKETIRQNLGELIDNTPLSL HHHHHHCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCH GKVRRGIVDILYPGTKVEDATGYNMSNILNTRGFNFIAPCLPLELEVSNKLKADLINLDI HHHHHHHEEEECCCCCCCCCCCCCHHHHHHCCCCCEECCCCCEEEECCCCCEEEEEEEEE FTNKPAKTFSPLGIPAIACCYHFDITDRFAKFVDDELKVFDTELIGQTTYRDGTYIRKDK EECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCEEECCC KPLYDSFCEALPPNTPLSYEPAVINIASGKREDVNRVKYPYVIDTIDIKGLGKCDIKLTA CCHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHCCCCEEEEEEEECCCCCEEEEEEE FSGFYSPDARLKDEFKNVYEAIFESNGKYTDDMSQSNYINFSTLDEINSVGTKLSYPKPP ECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCC VETDFLKNTKTNSDDGVNASLQTINETLYKVGDNSLLSATQYRKPRFYFYEPDSSKLANL CCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCCEEEEECCCCHHHHHH FGYGSYTNKLNYLFGGSNLSDVIVANKVIAYSFVFKDFNYREWLNLGSVNKTKRNLKLTF HCCCCCCCCEEEEECCCCCCHHHHHHHHHEEEEECCCCCHHHHHCCCCCCCCCCCEEEEE EIESNWIQKGTNQFNVDNSFNQLITLLVLN EECCCHHHCCCCEECCCCCHHHEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11048724 [H]