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The map label for this gene is ripX

Identifier: 13357702

GI number: 13357702

Start: 189018

End: 189800

Strand: Direct

Name: ripX

Synonym: UU145

Alternate gene names: 13357702

Gene position: 189018-189800 (Clockwise)

Preceding gene: 13357699

Following gene: 13357703

Centisome position: 25.14

GC content: 23.5

Gene sequence:

>783_bases
ATGGAGCGACAAAGTATGATAAACAAATTTCTACAAAGTATTAAAAAACGTAATTTATCAAAAAATACATATTTAACTTA
TGAATCACATTTAAGAAAGTTTAAGGTACAAGAACAAAGTTTTAAACAGATTATTAAGCAATTATTAAATAACAATTACA
AACCAAAAAGTCTAAAATTAGCTAAGTCAATTTTAAGTGAGTATTGAAAATTTAGCAAACAATACCAGTATGTTCAAGAA
TTAGAACAAATAAAATTAAGTAAAGAACAAAAAAGTTATAAAAAAGTTTTTAGTTTAGATGATATTAAAAAATGTTTAAA
AATTAATAAACAAGATACTAAACAGATTAAGTTTTATAAAACGATTTTATTATTCTATGCCACAACTGGAATTAGAGCAA
TGGAAATCTATCAACTTAAACAAATAAACAATGACTTATTCGTAATCAGTGGTAAAGGTAATAAGAACAGACAAATTTGC
TATATTGAACATCTGTGAAATAACATTAAAAACAAAAAACTACCATCAACTAAAACATTACGTAAATATCTAAAAGTATT
TTTTGATAATAAAAACGTTTCATTACATACGCTAAGACGTAGTTTTATTACAAACTTTTTAACTAGCAATGAAAATTATA
AACGTGGAGATATGCTAAAGATTGTACAGGATTTAGTTGGTCATGAAAATATCCAAACAACACTACAATATGTACAAATC
ACAAAAGAACAAGTGGACGACGTTTATAAAGAATTTTTTAAGGAATTTGAAAATGATAAATAA

Upstream 100 bases:

>100_bases
TATTATTAACATTATCATTATTTAATGCAATATTTGCAATTTTAACATTAGTCAATTTAACATCATAATCACGATTATTA
AACTTTATGTATATGGTTTT

Downstream 100 bases:

>100_bases
TATTTTTAATAAAAAGTTGTTAGTTTACAACGAAAAAGATCAACGTTGGTATAACAAATTTGATAGAACTAAACCTTTAT
TTTCACCAAGTAGACTATTA

Product: integrase-recombinase protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MERQSMINKFLQSIKKRNLSKNTYLTYESHLRKFKVQEQSFKQIIKQLLNNNYKPKSLKLAKSILSEYWKFSKQYQYVQE
LEQIKLSKEQKSYKKVFSLDDIKKCLKINKQDTKQIKFYKTILLFYATTGIRAMEIYQLKQINNDLFVISGKGNKNRQIC
YIEHLWNNIKNKKLPSTKTLRKYLKVFFDNKNVSLHTLRRSFITNFLTSNENYKRGDMLKIVQDLVGHENIQTTLQYVQI
TKEQVDDVYKEFFKEFENDK

Sequences:

>Translated_260_residues
MERQSMINKFLQSIKKRNLSKNTYLTYESHLRKFKVQEQSFKQIIKQLLNNNYKPKSLKLAKSILSEY*KFSKQYQYVQE
LEQIKLSKEQKSYKKVFSLDDIKKCLKINKQDTKQIKFYKTILLFYATTGIRAMEIYQLKQINNDLFVISGKGNKNRQIC
YIEHL*NNIKNKKLPSTKTLRKYLKVFFDNKNVSLHTLRRSFITNFLTSNENYKRGDMLKIVQDLVGHENIQTTLQYVQI
TKEQVDDVYKEFFKEFENDK
>Mature_260_residues
MERQSMINKFLQSIKKRNLSKNTYLTYESHLRKFKVQEQSFKQIIKQLLNNNYKPKSLKLAKSILSEY*KFSKQYQYVQE
LEQIKLSKEQKSYKKVFSLDDIKKCLKINKQDTKQIKFYKTILLFYATTGIRAMEIYQLKQINNDLFVISGKGNKNRQIC
YIEHL*NNIKNKKLPSTKTLRKYLKVFFDNKNVSLHTLRRSFITNFLTSNENYKRGDMLKIVQDLVGHENIQTTLQYVQI
TKEQVDDVYKEFFKEFENDK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 30992; Mature: 30992

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERQSMINKFLQSIKKRNLSKNTYLTYESHLRKFKVQEQSFKQIIKQLLNNNYKPKSLKL
CCHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
AKSILSEYKFSKQYQYVQELEQIKLSKEQKSYKKVFSLDDIKKCLKINKQDTKQIKFYKT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHH
ILLFYATTGIRAMEIYQLKQINNDLFVISGKGNKNRQICYIEHLNNIKNKKLPSTKTLRK
HHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEHHHHCCCCCCCCCCHHHHHH
YLKVFFDNKNVSLHTLRRSFITNFLTSNENYKRGDMLKIVQDLVGHENIQTTLQYVQITK
HHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
EQVDDVYKEFFKEFENDK
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MERQSMINKFLQSIKKRNLSKNTYLTYESHLRKFKVQEQSFKQIIKQLLNNNYKPKSLKL
CCHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
AKSILSEYKFSKQYQYVQELEQIKLSKEQKSYKKVFSLDDIKKCLKINKQDTKQIKFYKT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHH
ILLFYATTGIRAMEIYQLKQINNDLFVISGKGNKNRQICYIEHLNNIKNKKLPSTKTLRK
HHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEHHHHCCCCCCCCCCHHHHHH
YLKVFFDNKNVSLHTLRRSFITNFLTSNENYKRGDMLKIVQDLVGHENIQTTLQYVQITK
HHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
EQVDDVYKEFFKEFENDK
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11048724 [H]